View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_23 (Length: 321)
Name: NF16618_low_23
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 13308242 - 13308546
Alignment:
| Q |
5 |
tgaaatgaaactgagaaacactaagacagcttaaaaattctaaatagatttggattcaattataatgcttaaaggagaagaatttatttttgttggtaac |
104 |
Q |
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| T |
13308242 |
tgaaacgaaactgagaaaaactaagacagcttaaaaattctaaatagatttggattcaattataatgcttaaaggagaagaatttatttttgttggtaac |
13308341 |
T |
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| Q |
105 |
catatcactgtttaaagtatccaacggcttcgccgattactaatctcggtcagagaacgagactggccacctttagtgaggccgcccttgccaaccatgt |
204 |
Q |
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| T |
13308342 |
catatcactgtttaaagtatccaccggcttcgccgattactaatctcggtcagagaacgagactggccacctttagtgaggcctcccttgccaaccatgt |
13308441 |
T |
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| Q |
205 |
attttccacctacaagaattgaacccgagactatgcttaagggatccaaattcagttccactatgaccaaggtaatggtggttcactagtacatctttaa |
304 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13308442 |
attttccatctacaagaattgaacccgagactatgcttaagggatccaaattcagttccactatgaccaaggtaatggtggttcactagtaaatctttaa |
13308541 |
T |
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| Q |
305 |
atcac |
309 |
Q |
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| T |
13308542 |
atcac |
13308546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 40460004 - 40460137
Alignment:
| Q |
118 |
aaagtatccaacggcttcgccgattactaatctcggtcagagaacgagactggccacctttagtgaggccgcccttgccaaccatgtattttccacctac |
217 |
Q |
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|||||||||| ||||| ||| || | ||||||| |||||||||| |||||||||||||||||| || | ||| | |||||| | ||||||| || |
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| T |
40460004 |
aaagtatccaccggctatgccaataattaatctctgtcagagaacccgactggccacctttagtggggtcacccctttcaaccacattttttccatctgg |
40460103 |
T |
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| Q |
218 |
aagaattgaacccgagactatgcttaagggatcc |
251 |
Q |
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| T |
40460104 |
aaagctcgaacccgagactttgcttaagggatcc |
40460137 |
T |
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