View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_25 (Length: 296)
Name: NF16618_low_25
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 4330868 - 4330605
Alignment:
| Q |
18 |
cagagaaagaaagcttgagagcttgatgacgaggaatactctaaggtatcatcatattcaaagatgcaaaactgaacagatacaagcttatttataggag |
117 |
Q |
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| T |
4330868 |
cagagaaagaaagcttgagagcttgatgacgaggaatactctaaggtatcatcatattcaaagatgcaaaactgaacagatacaagcttatttataggag |
4330769 |
T |
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| Q |
118 |
cacgtaagtaactatctgagtaacaagctgattataactcaattgctagctgaatccatttctctaataaacacaaaacgctataatttttacaatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4330768 |
cacgtaagtaactatctgagtaacaagctgattataactcaattgctagctgaatccatttctctaataaacacaaaacgctataatttttacaatagaa |
4330669 |
T |
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| Q |
218 |
gtgcatggataacataacaaatcacattttgaataacaatatcctcaaccttaagggcacaggt |
281 |
Q |
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| T |
4330668 |
gtgcatggataacataacaaatcacattttgaataacaatatcctcaaccttaagggcacaggt |
4330605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 4338978 - 4338878
Alignment:
| Q |
20 |
gagaaagaaagcttgagagcttgatgacgaggaatactctaagg-tatcatcat-attcaaagatgcaaaactgaacagatacaagcttatttataggag |
117 |
Q |
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|||||||||||||||||||||| | || || |||||| |||| | |||| || |||||||||| ||||| |||||||||| ||||||||||||||||| |
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| T |
4338978 |
gagaaagaaagcttgagagcttaaagatgaaaaatactagaagggtgtcattatgattcaaagatacaaaattgaacagata-aagcttatttataggag |
4338880 |
T |
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| Q |
118 |
ca |
119 |
Q |
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|| |
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| T |
4338879 |
ca |
4338878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 4338863 - 4338829
Alignment:
| Q |
227 |
taacataacaaatcacattttgaataacaatatcc |
261 |
Q |
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| T |
4338863 |
taacataacaaatcacatcttgaataacaatatcc |
4338829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 4364903 - 4364810
Alignment:
| Q |
29 |
agcttgagagcttgatgacgaggaatactctaagg-tatcatcat-attcaaagatgcaaaa-ctgaacagatacaagcttatttataggagca |
119 |
Q |
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| T |
4364903 |
agcttgagagcttgacgatgaaaaatactaaaaggatatcattatgattcaaagatacaaaaactgaacatatacaagcttacttataggagca |
4364810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 4130762 - 4130806
Alignment:
| Q |
74 |
ttcaaagatgcaaaactgaac-agatacaagcttatttataggag |
117 |
Q |
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| T |
4130762 |
ttcaaagatacaaaactgaaagagatacaagcttatttataggag |
4130806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 17779793 - 17779856
Alignment:
| Q |
19 |
agagaaagaaagcttgagagcttgatgacgaggaatactctaaggtatcatcat-attcaaaga |
81 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| |||||||||| || ||||||||| |
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| T |
17779793 |
agagaaagaaagcttgagaacttgatgatgaggaatactcgaaggtatcattatgattcaaaga |
17779856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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