View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_low_26 (Length: 290)

Name: NF16618_low_26
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_low_26
NF16618_low_26
[»] chr1 (15 HSPs)
chr1 (123-279)||(36633347-36633503)
chr1 (30-123)||(36632937-36633030)
chr1 (34-96)||(51043032-51043094)
chr1 (45-94)||(7015943-7015992)
chr1 (42-95)||(36632876-36632929)
chr1 (45-96)||(28033941-28033992)
chr1 (39-96)||(41463907-41463964)
chr1 (34-96)||(17063247-17063309)
chr1 (42-97)||(9026244-9026298)
chr1 (44-87)||(34502901-34502944)
chr1 (39-93)||(13362733-13362787)
chr1 (39-97)||(16299863-16299921)
chr1 (177-277)||(36637813-36637910)
chr1 (51-96)||(10556292-10556337)
chr1 (39-83)||(17064083-17064127)
[»] chr2 (6 HSPs)
chr2 (43-97)||(18318336-18318390)
chr2 (39-88)||(43305273-43305322)
chr2 (39-87)||(38623658-38623706)
chr2 (41-81)||(8441409-8441450)
chr2 (43-79)||(36613315-36613351)
chr2 (43-79)||(36621166-36621202)
[»] chr8 (5 HSPs)
chr8 (44-97)||(44251284-44251337)
chr8 (42-90)||(3813259-3813307)
chr8 (39-97)||(3234686-3234744)
chr8 (44-82)||(13068283-13068321)
chr8 (42-82)||(42939285-42939325)
[»] chr6 (3 HSPs)
chr6 (43-87)||(5583605-5583649)
chr6 (42-99)||(31636903-31636960)
chr6 (43-80)||(3435789-3435826)
[»] chr3 (5 HSPs)
chr3 (44-96)||(23308596-23308648)
chr3 (33-96)||(18365804-18365867)
chr3 (43-82)||(22926427-22926466)
chr3 (39-95)||(4549524-4549580)
chr3 (43-87)||(46799049-46799093)
[»] chr5 (4 HSPs)
chr5 (42-97)||(1422660-1422715)
chr5 (42-87)||(20869355-20869400)
chr5 (42-96)||(19264713-19264767)
chr5 (42-95)||(42078958-42079010)
[»] chr4 (7 HSPs)
chr4 (43-96)||(20281434-20281487)
chr4 (39-87)||(44341999-44342047)
chr4 (43-82)||(21622703-21622742)
chr4 (34-76)||(54512269-54512311)
chr4 (39-96)||(40184339-40184396)
chr4 (39-84)||(51875605-51875649)
chr4 (43-79)||(3525346-3525382)
[»] chr7 (1 HSPs)
chr7 (42-87)||(21142363-21142408)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 123 - 279
Target Start/End: Original strand, 36633347 - 36633503
Alignment:
Q  123 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtactt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36633347 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtacgt 36633446  T
Q  223 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36633447 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttca 36633503  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 36632937 - 36633030
Alignment:
Q  30 acttctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattacccttattgttattact 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36632937 acttctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattactcttattgttattact 36633030  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 51043032 - 51043094
Alignment:
Q  34 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  51043032 ctaaaaagggtaatatttatattcaaagttgtgtaatcaatgcattaaatacttcctcttttg 51043094  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 7015992 - 7015943
Alignment:
Q  45 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttt 94  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7015992 aatatttgcattcaaaattgtgtaatcaatgcattaaatgcttcctcttt 7015943  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 36632929 - 36632876
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 95  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36632929 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgattcatctttt 36632876  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 28033941 - 28033992
Alignment:
Q  45 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  28033941 aatatttgcatttaaagttgtgtaatcaatgtattaaatgcttcctcttttg 28033992  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 41463964 - 41463907
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  41463964 aaggataatatttgcattcaaagttatgtaatcaatgcattaaatgctttatcttttg 41463907  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 17063247 - 17063309
Alignment:
Q  34 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||||||| ||||||||| ||||| |||||||  ||||||||||||||||||||| |||||||    
T  17063247 ctaataagagtaatatttacattcgaagttgtagaatcaatgcattaaatgcttcatcttttg 17063309  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 9026298 - 9026244
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  9026298 ggtaatatttacatttaaa-ttgtgtaatcaatgcattaaatgcttcatcttttgg 9026244  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 34502944 - 34502901
Alignment:
Q  44 taatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  34502944 taatatttgcattgaaagttgtgtaatcaatgcattaaaagctt 34502901  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 13362787 - 13362733
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctt 93  Q
    |||| |||||||| |||||||||||||||||| ||||||||| | ||||||||||    
T  13362787 aaggataatatttacattcaaagttgtgtaattaatgcattacacgcttcctctt 13362733  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 16299921 - 16299863
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||| ||| || ||||||    
T  16299921 aagggtaatatctgcattcaaaattgtgtaatcaatgaattaaatactttcttttttgg 16299863  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 36637813 - 36637910
Alignment:
Q  177 cacataacaagtgaaagttaagtggcatggcttctactaagtactttgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgt 276  Q
    ||||||||||||||||||| |||| ||||| |||||   ||||| |||||||||| || | ||| || |||||||| | ||||| ||| |||||||||||    
T  36637813 cacataacaagtgaaagttcagtgacatgggttcta---agtacgttgttgctttgcatgctgtattcttttgcatgtctttggctgtagcaaattctgt 36637909  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 10556337 - 10556292
Alignment:
Q  51 tgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    ||||||||||||| || || |||| |||||||||||||||||||||    
T  10556337 tgcattcaaagttatgcaaccaatacattaaatgcttcctcttttg 10556292  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 17064127 - 17064083
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaat 83  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||    
T  17064127 aaggataatatttgcatttaaagtttagtaatcaatgcattaaat 17064083  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 18318390 - 18318336
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18318390 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctttatcttttgg 18318336  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 43305273 - 43305322
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttc 88  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  43305273 aaggataatatttgcatttaaagttgtgtaatcaatgcattaaatacttc 43305322  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38623658 - 38623706
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  38623658 aaggataatatttgcatttaaagttgtgtaatcaatgaattaaatgctt 38623706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 8441409 - 8441450
Alignment:
Q  41 gggtaatatttgcattc-aaagttgtgtaatcaatgcattaa 81  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  8441409 gggtaatatttgcattcaaaagttgtgtaatcaatacattaa 8441450  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 36613315 - 36613351
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcatt 79  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36613315 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36613351  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 36621166 - 36621202
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcatt 79  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36621166 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36621202  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 44251284 - 44251337
Alignment:
Q  44 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  44251284 taatatttgtattcaaagttgtgtaatcaatgcattaaatgtttcctcttttgg 44251337  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 3813259 - 3813307
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcct 90  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  3813259 ggtaatatttgcattcaaagttgtgtaatcaatgtaataaatgcttcct 3813307  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3234744 - 3234686
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||| || |||||    
T  3234744 aagggtaatatttgcattcaaaattgtgtaatcaatgaattaaaggcttcttcatttgg 3234686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13068321 - 13068283
Alignment:
Q  44 taatatttgcattcaaagttgtgtaatcaatgcattaaa 82  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  13068321 taatatttgcattgaaagttgtgtaatcaatgtattaaa 13068283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 42939285 - 42939325
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaa 82  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  42939285 ggtagtatttgcattaaaagttgtgtagtcaatgcattaaa 42939325  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 5583605 - 5583649
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5583605 gtaatatttgcaatcaaagttgtgtaatcaatgcattaaatgctt 5583649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 31636960 - 31636903
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggtt 99  Q
    ||||||||||||||| ||||||||||||| ||| |||||||| |||  ||||||||||    
T  31636960 ggtaatatttgcatttaaagttgtgtaattaatacattaaatactttttcttttggtt 31636903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 3435826 - 3435789
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcatta 80  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  3435826 gtaatatttgcattgaaagttatgtaatcaatgcatta 3435789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 23308596 - 23308648
Alignment:
Q  44 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  23308596 taatatttacattcaaaattgtgtaatcaatgcattaaatacttcctcttttg 23308648  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 18365867 - 18365804
Alignment:
Q  33 tctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    ||||| ||||||||||||| | ||||||||| |||||| ||||||||||| |||| ||||||||    
T  18365867 tctaaaaagggtaatatttaccttcaaagttatgtaataaatgcattaaaagctttctcttttg 18365804  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 22926466 - 22926427
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 82  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22926466 gtaatatttgcattgaaagttgtgtaatcaatgcattaaa 22926427  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 4549580 - 4549524
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 95  Q
    |||| |||||||||||||||||||||||| || |||||||| ||| ||| |||||||    
T  4549580 aaggttaatatttgcattcaaagttgtgttattaatgcattgaatactttctctttt 4549524  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 46799093 - 46799049
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||    
T  46799093 gtaatttttgcattaaaagatgtgtaatcaatgcattaaaagctt 46799049  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 1422660 - 1422715
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 97  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||    
T  1422660 ggtaatatttgcattcaaagttggataatcaatgcattgaatgcttactcttttgg 1422715  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 20869355 - 20869400
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  20869355 ggtagtatttgcattgaaagttgtgtaatcaatgcattaaaagctt 20869400  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 19264767 - 19264713
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||||| ||||||||||||||||  |||||||||||||||||  || ||||||||    
T  19264767 ggtaatgtttgcattcaaagttggataatcaatgcattaaatattttctcttttg 19264713  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 42079010 - 42078958
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 95  Q
    |||||||| |||||||||| || |||||| |||||||||||||||| |||||||    
T  42079010 ggtaatatatgcattcaaa-ttatgtaataaatgcattaaatgctttctctttt 42078958  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 20281487 - 20281434
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||    
T  20281487 gtaatatttgcatttaaaattgtgtaatcaatgcattaaatgtttcatcttttg 20281434  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 44341999 - 44342047
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    ||||||||||||| |||||||||||||| | ||||| ||||||||||||    
T  44341999 aagggtaatatttacattcaaagttgtgcattcaatacattaaatgctt 44342047  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 21622742 - 21622703
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 82  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  21622742 gtaatatttacattgaaagttgtgtaatcaatgcattaaa 21622703  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 54512311 - 54512269
Alignment:
Q  34 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgc 76  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  54512311 ctaaaaagggtaatgtttacattcaaagttgtgtaatcaatgc 54512269  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 40184396 - 40184339
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 96  Q
    |||| |||||| || ||||||||||||||||||| ||||||||||  ||| |||||||    
T  40184396 aaggataatatatgtattcaaagttgtgtaatcattgcattaaatatttcttcttttg 40184339  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 51875649 - 51875605
Alignment:
Q  39 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatg 84  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||    
T  51875649 aaggataatatttgcattcaa-gttgtgtaatcaatacattaaatg 51875605  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 3525346 - 3525382
Alignment:
Q  43 gtaatatttgcattcaaagttgtgtaatcaatgcatt 79  Q
    |||||||||||||| |||||||| |||||||||||||    
T  3525346 gtaatatttgcattgaaagttgtataatcaatgcatt 3525382  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 21142363 - 21142408
Alignment:
Q  42 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 87  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||    
T  21142363 ggtaatatttacattcaaagtagtgtgatcaatgcattaaatgctt 21142408  T

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