View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16618_low_27 (Length: 284)
Name: NF16618_low_27
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 33504253 - 33504508
Alignment:
| Q |
8 |
ccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33504253 |
ccaacaatatacttgtttggatcgcaactcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
33504352 |
T |
|
| Q |
108 |
ggggatattttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaattttctttcttggtttgatgctttatctgaatta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
33504353 |
agggatattttggaaggctttgtttctaaccgtggaattttaggagtgcaaatcgagtttctaaaat----tttcttggtttgatgccttatctgaattg |
33504448 |
T |
|
| Q |
208 |
catgatttgaataatttgatgtggatacatataatcaatattgttttgatagattgaaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33504449 |
catgatttgaataatttgatgtggatacatataatcaatattgttttgatagattgaaaa |
33504508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 22420258 - 22420147
Alignment:
| Q |
39 |
tcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggatattttggaaggctttgtttctaacg |
138 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||| ||||||||| |||| |||||| | | |||||||| ||||||||| || || ||| |||||| | |
|
|
| T |
22420258 |
tcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattggagtaagtttgtgaatttagggatatttcgg-cgggtttatttctacca |
22420160 |
T |
|
| Q |
139 |
gtggaattttagg |
151 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22420159 |
gtggaattttagg |
22420147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 4085064 - 4085223
Alignment:
| Q |
15 |
tatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggata |
114 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4085064 |
tatacttgtttcgatcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagata |
4085163 |
T |
|
| Q |
115 |
ttttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||| | ||||||| | |||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
4085164 |
ttttggatgagtttgttttttacggtggaatttcatgagtgcaaatggagtttctaaaat |
4085223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 3417542 - 3417701
Alignment:
| Q |
15 |
tatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggata |
114 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
3417542 |
tatatttgtttcgatcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtataatagtgaatttggagata |
3417641 |
T |
|
| Q |
115 |
ttttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
3417642 |
ttttggaagagtttgttttttacggtggaatttcatgagtgcaaatggagtttctaaaat |
3417701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 39205682 - 39205841
Alignment:
| Q |
8 |
ccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
107 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||| ||| | |||| |||| || |
|
|
| T |
39205682 |
ccaacaataaacttgtttggata-caattcctcatgaagatattt------tatgtcaaatttattaaagtgattgcaatatgagcacggtaatgaactt |
39205774 |
T |
|
| Q |
108 |
ggggatattttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
39205775 |
ggggatattttggaagggtttgtctctaacggtggacttttaggagtgaaaatcgagtttataaaat |
39205841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 22320140 - 22320201
Alignment:
| Q |
44 |
aagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
22320140 |
aagatatttcctatttatgtcaaatttattcaatttatcgcaattggagtatggtagtgaat |
22320201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 3163750 - 3163845
Alignment:
| Q |
7 |
tccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaat |
105 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||||| || ||||||||||||||||||||||||||| |||| ||| |||| |||||||| |||||||| |
|
|
| T |
3163750 |
tccaacaatattgttgtttggattgcaa---ctcatcaatatatttcctatttatgtcaaatttattcaatttatcacaattggagtatgatagtgaat |
3163845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University