View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_29 (Length: 271)
Name: NF16618_low_29
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 28833071 - 28832801
Alignment:
| Q |
1 |
aaaggtttcagacaacaatgctttattatgtttcttttgtttggggatttaaaaccttagtgactaagcttgttcaaattgtgatccacaaccacctaat |
100 |
Q |
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| T |
28833071 |
aaaggtttcagacaacaatgctttattatgtttcttttgtttggggatttaaaaccttagtgactaagcttgttcaaattgtgatccacaaccacctaat |
28832972 |
T |
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| Q |
101 |
atatacatgtcaattctagttcaacttacttcaacnnnnnnnncttctaaattgtgagaatgaaccaattatttacaatttaattgataacttcattata |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28832971 |
atatacatgtcaattctagttcaacttacttcaacttttttttcttctaaattgtgagaatgaaccaattatttacaatttaattgataacttcattata |
28832872 |
T |
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| Q |
201 |
gaggtttgattattttcaatatagttatagtagtaggtgataattagtggtacattattctaaatatcaat |
271 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28832871 |
gaggtttaattattttcaatatagttatagtagtaggtgataattagtggtacattattctaaatatcaat |
28832801 |
T |
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