View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_low_32 (Length: 259)

Name: NF16618_low_32
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_low_32
NF16618_low_32
[»] chr3 (8 HSPs)
chr3 (54-243)||(49497806-49497995)
chr3 (58-243)||(31159319-31159504)
chr3 (1-55)||(49498064-49498118)
chr3 (58-234)||(51108935-51109112)
chr3 (104-174)||(49641099-49641169)
chr3 (128-228)||(8564439-8564539)
chr3 (146-183)||(31933804-31933841)
chr3 (146-183)||(31953137-31953174)
[»] chr5 (2 HSPs)
chr5 (58-243)||(29957017-29957202)
chr5 (137-237)||(19234008-19234108)
[»] chr2 (5 HSPs)
chr2 (57-224)||(33649276-33649445)
chr2 (101-180)||(45013730-45013809)
chr2 (105-180)||(11551829-11551904)
chr2 (104-228)||(44884720-44884844)
chr2 (7-55)||(33649517-33649565)
[»] chr6 (3 HSPs)
chr6 (118-234)||(11605765-11605881)
chr6 (146-243)||(26905942-26906039)
chr6 (106-174)||(20928594-20928662)
[»] chr7 (3 HSPs)
chr7 (105-180)||(48768500-48768575)
chr7 (104-228)||(17244058-17244182)
chr7 (92-240)||(29960906-29961054)
[»] chr4 (2 HSPs)
chr4 (54-180)||(4461040-4461166)
chr4 (118-183)||(42330218-42330283)
[»] scaffold0011 (1 HSPs)
scaffold0011 (104-228)||(188055-188179)
[»] chr1 (2 HSPs)
chr1 (58-174)||(41339381-41339497)
chr1 (146-179)||(30931258-30931291)
[»] chr8 (1 HSPs)
chr8 (62-183)||(13813187-13813308)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 54 - 243
Target Start/End: Complemental strand, 49497995 - 49497806
Alignment:
Q  54 cggagaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgacc 153  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49497995 cggataggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgacc 49497896  T
Q  154 ccaccagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaaggaatggcctg 243  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49497895 ccaccagaaggaattcatcatcttttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaagtaatggcctg 49497806  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 31159504 - 31159319
Alignment:
Q  58 gaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccac 157  Q
    |||||||||||| | ||| || || ||||  || ||||| ||||| ||||||||| ||  ||| ||||| || || |||| ||||| ||| || ||||||    
T  31159504 gaggtctttaaatctcattccgccatgaattttatgcatggacaatttctcccaattcaaccaattaatgccacgatgagaagttcgaccgtggccccac 31159405  T
Q  158 cagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaaggaatggcctg 243  Q
    ||||| ||||| ||||| || |  ||| ||||||||||| | || |||||||| ||||||||||| ||||| || |||||||||||    
T  31159404 cagaaagaatttatcatcttctaaatagtattaattaaatttgtcggtaactggaaaatgctcatgacataggagggaatggcctg 31159319  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49498118 - 49498064
Alignment:
Q  1 caagctgtgttgtgagataggtatgtgagggaaaataccgtgctttaaaaatacg 55  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  49498118 caagctgtgtcgtaagataggtatgtgagggaaaatatcgtgctttaaaaatacg 49498064  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 51109112 - 51108935
Alignment:
Q  58 gaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccac 157  Q
    ||||||||| || |||||||| || |||   || ||||| || | ||||||||||||   |||||| |||| |||||||  |||||| ||||||| ||||    
T  51109112 gaggtctttgaagcccatacctccatgatttttatgcatagagagcttctcccaacttagccagttgatactgcgttgatgagttcttccatgacaccac 51109013  T
Q  158 cagaaggaattcatcatattttcgataatattaattaaagtagttggtaactg-aaaaatgctcataacatacgaagg 234  Q
    || || ||||||||||| || |||||  ||||||| | ||| | ||| ||||| |||||| ||||| |||||||||||    
T  51109012 caaaacgaattcatcattttctcgatggtattaataagagttgctggcaactgaaaaaatactcatgacatacgaagg 51108935  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 49641169 - 49641099
Alignment:
Q  104 ttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcat 174  Q
    ||||||||| || |||||  |||||||||||| || |||||||||||||||||||| || || ||||||||    
T  49641169 ttctcccaattcatccagcgaataccgcgttgtgttgttctaccatgaccccaccaaaatgagttcatcat 49641099  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 8564539 - 8564439
Alignment:
Q  128 ccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacat 227  Q
    ||||||||||  ||| | |||||||||||||||||||| |||||||| || |||||    | |||||||||| | || | ||||||||||||||| ||||    
T  8564539 ccgcgttgagccgtttttccatgaccccaccagaaggagttcatcatcttctcgatggagtcaattaaagtactaggaagctgaaaaatgctcattacat 8564440  T
Q  228 a 228  Q
    |    
T  8564439 a 8564439  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 31933841 - 31933804
Alignment:
Q  146 ccatgaccccaccagaaggaattcatcatattttcgat 183  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  31933841 ccatgtccccaccagaaggaattcatcatcttttcgat 31933804  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 31953174 - 31953137
Alignment:
Q  146 ccatgaccccaccagaaggaattcatcatattttcgat 183  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  31953174 ccatgtccccaccagaaggaattcatcatcttttcgat 31953137  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 29957017 - 29957202
Alignment:
Q  58 gaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccac 157  Q
    |||||| ||||||||||| ||||  ||||||||||| | | ||||||||||||||||| | ||| |||||  |||||| |||||||||||||||| ||||    
T  29957017 gaggtccttaaaacccattcccctatgaaccttgtgtactaacaacttctcccaactcatacagctaatattgcgttgtgtagttctaccatgacgccac 29957116  T
Q  158 cagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaaggaatggcctg 243  Q
    ||||||||||||||||| | ||||||| | |||||||| ||| ||||| |   ||||||||||||||||||  |||||||| ||||    
T  29957117 cagaaggaattcatcatctcttcgatactgttaattaacgtaattggtgataaaaaaatgctcataacataaaaaggaatgacctg 29957202  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 19234108 - 19234008
Alignment:
Q  137 gtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaaggaa 236  Q
    |||||||||||||||||||||||||| ||||||||||| ||  | || |||| ||||||||| ||||| ||||||||||| |||||||||||||| ||||    
T  19234108 gtagttctaccatgaccccaccagaaagaattcatcatcttcactattatatcaattaaagtggttggcaactgaaaaatactcataacatacgatggaa 19234009  T
Q  237 t 237  Q
    |    
T  19234008 t 19234008  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 33649445 - 33649276
Alignment:
Q  57 agaggtctttaaaacccatac-ccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgacccc 155  Q
    ||||||| ||||||||||||| |||| | ||||||||||| | ||||||||||| ||||| ||  |||||||||| |||  || ||||||| ||||||||    
T  33649445 agaggtcattaaaacccatacaccccctaaaccttgtgcactaacaacttctccgaactcatcaggttaataccgagttaggtggttctacaatgacccc 33649346  T
Q  156 accagaaggaattcatcatatttt-cgataatattaattaaagtagttggtaactgaaaaatgctcataa 224  Q
    |||  ||| ||||||| || |||| |||||||||||||||| ||| ||||||||| ||||||||||||||    
T  33649345 accgaaagtaattcataatttttttcgataatattaattaatgtaattggtaactaaaaaatgctcataa 33649276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 45013809 - 45013730
Alignment:
Q  101 aacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttc 180  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||| || ||||||||||| |||||    
T  45013809 aacttctcccacctcatccagttaatacctcgctgagtagttctaccatgaccccaccaaaaagaattcatcatcttttc 45013730  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 11551904 - 11551829
Alignment:
Q  105 tctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttc 180  Q
    ||||||| ||| ||||||||||||| || |||||||||||||||||| ||||||| || ||||||||||| |||||    
T  11551904 tctcccacctcatccagttaatacctcgctgagtagttctaccatgatcccaccaaaaagaattcatcatcttttc 11551829  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 44884844 - 44884720
Alignment:
Q  104 ttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttg 203  Q
    ||||||||| || |||||  |||||||||||| || |||||||||||||||||||| || || |||||||| || || ||    |  ||||| || ||||    
T  44884844 ttctcccaattcatccagcgaataccgcgttgtgttgttctaccatgaccccaccaaaatgagttcatcatcttctcaattgagtcgattaaggtggttg 44884745  T
Q  204 gtaactgaaaaatgctcataacata 228  Q
    ||||||||||||||||||| |||||    
T  44884744 gtaactgaaaaatgctcatcacata 44884720  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 33649565 - 33649517
Alignment:
Q  7 gtgttgtgagataggtatgtgagggaaaataccgtgctttaaaaatacg 55  Q
    |||| |||||||||||||| |||| |||||| |||||||||||||||||    
T  33649565 gtgtcgtgagataggtatgggaggaaaaatatcgtgctttaaaaatacg 33649517  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 11605765 - 11605881
Alignment:
Q  118 ccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatg 217  Q
    |||||| |||||||||| | ||||||| |||||||||||||| || ||||||||||| || |||||  ||| ||| | ||| | ||| || |||||||||    
T  11605765 ccagttgataccgcgtttattagttctgccatgaccccaccaaaacgaattcatcattttctcgatggtatcaataagagttgctggcaattgaaaaatg 11605864  T
Q  218 ctcataacatacgaagg 234  Q
    ||||| |||||||||||    
T  11605865 ctcatgacatacgaagg 11605881  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 26906039 - 26905942
Alignment:
Q  146 ccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttggtaactgaaaaatgctcataacatacgaaggaatggcctg 243  Q
    |||||||||||||| |||||||||||||| || || ||   ||| || ||||| ||||| ||||| ||||| ||||||||||| |||||||| |||||    
T  26906039 ccatgaccccaccaaaaggaattcatcatcttctcaattgaattgatcaaagtcgttggcaactggaaaatactcataacataagaaggaattgcctg 26905942  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 20928662 - 20928594
Alignment:
Q  106 ctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcat 174  Q
    |||||||||| || ||| |||||| || || ||||||||||||||||||||||| ||  ||||||||||    
T  20928662 ctcccaactcatctagtgaatacctcgctgtgtagttctaccatgaccccaccataaataattcatcat 20928594  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 48768575 - 48768500
Alignment:
Q  105 tctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttc 180  Q
    ||||||| ||| ||||||||||||| || |||||||||| ||||||||||||||| || ||||||||||| |||||    
T  48768575 tctcccacctcatccagttaatacctcgctgagtagttcaaccatgaccccaccaaaaagaattcatcatcttttc 48768500  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 17244058 - 17244182
Alignment:
Q  104 ttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttg 203  Q
    ||||||||| || |||||  ||||||||| || || |||||||||||||||||||| || || |||||||| || || ||    |  ||||| || ||||    
T  17244058 ttctcccaattcatccagcgaataccgcgctgtgttgttctaccatgaccccaccaaaatgagttcatcatcttctcaattgagtcgattaaggtggttg 17244157  T
Q  204 gtaactgaaaaatgctcataacata 228  Q
    ||||||||||||||||||| |||||    
T  17244158 gtaactgaaaaatgctcatcacata 17244182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 29961054 - 29960906
Alignment:
Q  92 tgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaa 191  Q
    |||||||| ||||| ||||||||   ||||||||||||  | || |||| ||| ||||| |||||||| || |||||||||||  |||||||| |  | |    
T  29961054 tgcattgataacttttcccaacttaaccagttaatacccagatgtgtagatctgccatgcccccaccaaaatgaattcatcatcctttcgatagtggtga 29960955  T
Q  192 ttaaagtagttggtaactgaaaaatgctcataacatacgaaggaatggc 240  Q
    | |  ||||| ||||| ||||||| |||||||||||| || ||||||||    
T  29960954 taagcgtagtaggtaattgaaaaaggctcataacataagacggaatggc 29960906  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 4461166 - 4461040
Alignment:
Q  54 cggagaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgacc 153  Q
    ||||||| || || ||||||||||| || || |||||  | || || ||| ||||||| ||  || ||||||||||  | ||||||||||||||||||||    
T  4461166 cggagagatccttgaaacccataccaccatggaccttaggaatagataacctctcccaccttatctagttaataccttgctgagtagttctaccatgacc 4461067  T
Q  154 ccaccagaaggaattcatcatattttc 180  Q
    |||||| || ||||||||||| |||||    
T  4461066 ccaccaaaaagaattcatcatcttttc 4461040  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 42330283 - 42330218
Alignment:
Q  118 ccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgat 183  Q
    |||||| |||||||||||| ||||||| ||||||| |||||| || ||||||||||| || |||||    
T  42330283 ccagttgataccgcgttgattagttcttccatgacaccaccaaaacgaattcatcattttctcgat 42330218  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 188055 - 188179
Alignment:
Q  104 ttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccagaaggaattcatcatattttcgataatattaattaaagtagttg 203  Q
    ||||||||| || |||||  ||||||||| || || |||||||||||||||||||| || || |||||||| || || ||    |  ||||| || ||||    
T  188055 ttctcccaattcatccagcgaataccgcgctgtgttgttctaccatgaccccaccaaaatgagttcatcatcttctcaattgagtcgattaaggtggttg 188154  T
Q  204 gtaactgaaaaatgctcataacata 228  Q
    ||||||||||||||||||| |||||    
T  188155 gtaactgaaaaatgctcatcacata 188179  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 41339497 - 41339381
Alignment:
Q  58 gaggtctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccac 157  Q
    |||||| || || ||||| ||||| |||| |||  || |||| | ||||||| ||||| || ||| |||||| ||||  |||||||||||||||||||||    
T  41339497 gaggtccttgaaccccattcccccatgaatcttaggcgttgaaagcttctccaaactcatctagtgaatacctcgttatgtagttctaccatgaccccac 41339398  T
Q  158 cagaaggaattcatcat 174  Q
    |||||  ||||||||||    
T  41339397 cagaaataattcatcat 41339381  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 30931258 - 30931291
Alignment:
Q  146 ccatgaccccaccagaaggaattcatcatatttt 179  Q
    ||||||||||||||||||||||||||||| ||||    
T  30931258 ccatgaccccaccagaaggaattcatcatttttt 30931291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 13813187 - 13813308
Alignment:
Q  62 tctttaaaacccatacccccgtgaaccttgtgcattgacaacttctcccaactcctccagttaataccgcgttgagtagttctaccatgaccccaccaga 161  Q
    |||||||||||||| || ||  ||  ||| ||||| || ||||| |||||||||  |||||||||||| |  || ||||||| |||||| |||||||| |    
T  13813187 tctttaaaacccattccaccacgagacttatgcatggaaaacttttcccaactcaaccagttaatacctctatgtgtagttcgaccatgcccccaccaaa 13813286  T
Q  162 aggaattcatcatattttcgat 183  Q
    |  ||||||||||  |||||||    
T  13813287 acaaattcatcatcctttcgat 13813308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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