View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16618_low_34 (Length: 250)
Name: NF16618_low_34
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 40864898 - 40864679
Alignment:
| Q |
12 |
gatgaagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagcttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40864898 |
gatgaagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagcttg |
40864799 |
T |
|
| Q |
112 |
gacattgtgaaagcgagagctctctaagcctctctttttgctaaatatattcattctccttccttcactgttatgagttcattcctagcttattggcaac |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40864798 |
gacattgtgaaagcgagagccctctaagcctctctttttgctaaatatattcattctccttccttcactgttatgagttcattcctagcttattggcaac |
40864699 |
T |
|
| Q |
212 |
tttgggagccatcttgtagt |
231 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
40864698 |
tttgggagccatcttgtagt |
40864679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 36529073 - 36528985
Alignment:
| Q |
16 |
aagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagat |
104 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||||||||||| | ||||| ||||| |||| |||||||||||||||| | |||||| |
|
|
| T |
36529073 |
aagatgatttatgcaagctccaaagatagattcaagagagagcttgatggtattcagattgagttgcaagcaactgatcctactgagat |
36528985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 2791096 - 2791208
Alignment:
| Q |
12 |
gatgaagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagcttg |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2791096 |
gatgaagatggtgtatgcaagttctaaggatagattcaagagggagttggatggcattcaagttgaactccaagcaactgatccaagtgagatgagcttg |
2791195 |
T |
|
| Q |
112 |
gacattgtgaaag |
124 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2791196 |
gacatcgtgaaag |
2791208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 45483558 - 45483652
Alignment:
| Q |
16 |
aagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagctt |
110 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||| ||| | ||||||||||||||||| |||||||||| ||||| ||||| |||||||| |
|
|
| T |
45483558 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctt |
45483652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University