View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_36 (Length: 247)
Name: NF16618_low_36
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 52823366 - 52823147
Alignment:
| Q |
9 |
gattatactgccgcatatttacgatgcttattttgtagttcatttcttttgcttaaacgtttttcatgtgcggtgtagctttcaataatatgttgtttcg |
108 |
Q |
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| T |
52823366 |
gattatactgccgcatatttacgatgcctattttatatttcatttcttttgcttaaatgtttttcatgtgcggtgtagctttcaataatatgttgtttcg |
52823267 |
T |
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| Q |
109 |
nnnnnnnn-tatatgtaaacatttttctgaataaaaaataatcaaggcttcattgtaacacacgttgagtaaaattaataaactaggtcccatgacgaac |
207 |
Q |
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| T |
52823266 |
gaaaaaaaatatacgtaaacatttttctgaataaaaaat---caaggctttattgtaacacacgttgagtaaaattaataaactaggtcccatgacgaac |
52823170 |
T |
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| Q |
208 |
atggatattttgagtgcactata |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
52823169 |
atggatattttgagtgcactata |
52823147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 745366 - 745454
Alignment:
| Q |
16 |
ctgccgcatatttacgatgcttattttgtagttcatttcttttgcttaaacgtttttcatgtgcggtgtagctttcaataatatgttgt |
104 |
Q |
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| T |
745366 |
ctgccgcatatttatggtgcctattatgtatttcattgcttttgcttagccgctcttcctctgcagtgtagctttcaacaatatgttgt |
745454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 41057121 - 41057161
Alignment:
| Q |
67 |
gtttttcatgtgcggtgtagctttcaataatatgttgtttc |
107 |
Q |
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| T |
41057121 |
gtttttcttgtgcagtgtagctttcaataatatgctgtttc |
41057161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 25664324 - 25664372
Alignment:
| Q |
15 |
actgccgcatatttacgatgcttattttgtagttcatttcttttgctta |
63 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
25664324 |
actgccgcatatttacgatgtctattttgtagttcatttcttttactta |
25664372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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