View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_40 (Length: 233)
Name: NF16618_low_40
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 36395040 - 36394851
Alignment:
| Q |
17 |
ctaggtttaagtgtgctagcagctttgatatcagtgatggttaggattacagtattccgttcgcctatgcatggtttgcgctccaaaaagcccaccacga |
116 |
Q |
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| T |
36395040 |
ctaggtttaagtgtgctagc---tttgatatcagtgatggttggggttacagtattccgttcgcctatgcatgatttgcgcttcaaaaagcccaccacaa |
36394944 |
T |
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| Q |
117 |
caattgagacgataacaaatacaatattaaagtcacattggatttcgtccaattatattgtactcaaggtcaatacactgcagttgcaacaca |
209 |
Q |
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| T |
36394943 |
caattgagacgataacaaatacaatattaaaatcacattggatttcgtccaatgatattgtactcaaggtcaatacactgcagttgcaacaca |
36394851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 36401600 - 36401445
Alignment:
| Q |
37 |
agctttgatatcagtgatggttaggattacagtattccgttcgcctatgcatggtttgcgctccaaaaagcccaccacgacaattgagacgataacaaat |
136 |
Q |
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| T |
36401600 |
agctttgatatcaatgatggttggggctacaatattccattcgcctgtgaatggtttgcgcttcaaaaagtctgccccaacaaatgagaccgtaactaat |
36401501 |
T |
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| Q |
137 |
acaatattaaagtcacattggatttcgtccaattatattgtactcaaggtcaatac |
192 |
Q |
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| T |
36401500 |
aaactattcaaatcacaatggatttcctccaatgatattgtacttaaggtcaatac |
36401445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 36377795 - 36377720
Alignment:
| Q |
116 |
acaattgagacgataacaaatacaatattaaagtcacattggatttcgtccaattatattgtactcaaggtcaata |
191 |
Q |
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| T |
36377795 |
acaattgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaaggtcaata |
36377720 |
T |
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