View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16618_low_43 (Length: 227)
Name: NF16618_low_43
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36404229 - 36404009
Alignment:
| Q |
1 |
atgagagttttattataaacaagatagcttgacataccgacaataaagatgatttaggtcgataaaattaatacaagaaagtgaatttaaaatctactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36404229 |
atgagagttttattataaacaagatagcttgacataccgacaataaagatgatttaggtcaataaaattaatacaagaaagtgagtttaaaatctactta |
36404130 |
T |
|
| Q |
101 |
cgattaagaatttgattgattgactcaactttctcttatcatcaaaatcaaattcacctaaactttttcttatgtnnnnnnnnnnnntcgacatccacac |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
36404129 |
cgattaaaaatttgattgattgactcaactttctcttatcatcaaaatcaaattcacctaaactttttcttacgtaaaaaaaaagaatcgacatccacac |
36404030 |
T |
|
| Q |
201 |
aacatcgcttaaactaaaaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36404029 |
aacatcgcttaaactaaaaac |
36404009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University