View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_low_44 (Length: 224)

Name: NF16618_low_44
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_low_44
NF16618_low_44
[»] chr2 (3 HSPs)
chr2 (1-215)||(36071476-36071690)
chr2 (55-128)||(43559206-43559279)
chr2 (54-130)||(35796513-35796589)
[»] chr1 (3 HSPs)
chr1 (50-130)||(36003019-36003099)
chr1 (55-132)||(33351052-33351129)
chr1 (63-129)||(26918762-26918828)
[»] chr8 (1 HSPs)
chr8 (55-130)||(4271483-4271558)
[»] chr3 (1 HSPs)
chr3 (55-129)||(49918005-49918079)
[»] chr4 (2 HSPs)
chr4 (54-128)||(33583344-33583418)
chr4 (45-120)||(33589081-33589156)
[»] chr7 (1 HSPs)
chr7 (63-129)||(41826245-41826311)
[»] chr6 (1 HSPs)
chr6 (50-129)||(6282865-6282944)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36071690 - 36071476
Alignment:
Q  1 ataaatgtggtttcataaaacgtgttataaaaaatttatatagcaaaataaaaacacgcccagtgggactcgaacccacaatcgcttgattagaagtcaa 100  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36071690 ataaatgtggttccattaaacgtgttataaaaaatttatatagcaaaataaaaacacgcccagtgggactcgaacccacaatcgcttgattagaagtcaa 36071591  T
Q  101 gcgccttatccattaggccatgggcgctttgtttgatttatgtatgtttcatcttaataaaatatttaaatgcttcgaagcaatcaggaccaaatgataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||  | ||||||||||||||| ||| ||||||||||||||||||||||||    
T  36071590 gcgccttatccattaggccatgggcgctttgtttgatttaattctgtttcattattataaaatatttaaattctttgaagcaatcaggaccaaatgataa 36071491  T
Q  201 acaatttaagaggga 215  Q
    |||||||||||||||    
T  36071490 acaatttaagaggga 36071476  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 43559279 - 43559206
Alignment:
Q  55 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43559279 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgct 43559206  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 35796513 - 35796589
Alignment:
Q  54 acacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 130  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  35796513 acacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgcttt 35796589  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 36003099 - 36003019
Alignment:
Q  50 aaaaacacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 130  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36003099 aaaagcacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 36003019  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 33351052 - 33351129
Alignment:
Q  55 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctttgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  33351052 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgagcgccttgt 33351129  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 26918828 - 26918762
Alignment:
Q  63 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 129  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||    
T  26918828 gtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccgttaggccacgggtgctt 26918762  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 4271558 - 4271483
Alignment:
Q  55 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271558 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 4271483  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 49918079 - 49918005
Alignment:
Q  55 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49918079 cacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 49918005  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 33583344 - 33583418
Alignment:
Q  54 acacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgct 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  33583344 acacgcccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggccacgggcgct 33583418  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 33589081 - 33589156
Alignment:
Q  45 aaaataaaaacacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggcca 120  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33589081 aaaaaaaaaacacacccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggcca 33589156  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 41826245 - 41826311
Alignment:
Q  63 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  41826245 gtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggccacgggtgctt 41826311  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 6282865 - 6282944
Alignment:
Q  50 aaaaacacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 129  Q
    |||||||  |||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  6282865 aaaaacaaacccaatggaactcaaacccacaatcacttgattagaagtcaagcgccttatccattaggccatgggtgctt 6282944  T

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