View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_45 (Length: 211)
Name: NF16618_low_45
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_45 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
34950 |
aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact |
34871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 41620 - 41541
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
41620 |
aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact |
41541 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27445738 - 27445817
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
27445738 |
aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact |
27445817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20909260 - 20909203
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt |
77 |
Q |
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| T |
20909260 |
aactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt |
20909203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20923708 - 20923651
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt |
77 |
Q |
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| T |
20923708 |
aactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt |
20923651 |
T |
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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 47247045 - 47247137
Alignment:
| Q |
25 |
gggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt |
118 |
Q |
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| T |
47247045 |
gggtgttcattcattgaagcaggaaaacaacaaaaa-tataaaaggtgactttctatgatgtagatgaaatactataagcgaaattatacatgt |
47247137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 41326158 - 41326063
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttataca |
115 |
Q |
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| T |
41326158 |
aactgggggtgttcattcattgaagcgggaaaacaacaaaaaa-ataaaaggtgactttctatgatgtagatgaaaaactatgagcgaaattataca |
41326063 |
T |
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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 42312374 - 42312276
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt |
118 |
Q |
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| T |
42312374 |
aactgggggtgttcattcattgaagcaggaaaagaacaaaaa-tataaaaggtgactttctctgatgtagatgaaatactatgagcgaaattatacatgt |
42312276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 15580719 - 15580653
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaa-caacaaaggctataaaaggtgactttttatgat |
84 |
Q |
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| T |
15580719 |
aactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgat |
15580653 |
T |
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