View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_5 (Length: 535)
Name: NF16618_low_5
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 203 - 520
Target Start/End: Complemental strand, 8162854 - 8162517
Alignment:
| Q |
203 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
302 |
Q |
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| T |
8162854 |
tgggaacatccatgattttctgaatcttttttggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
8162755 |
T |
|
| Q |
303 |
atagtnnnnnnngtaatttg-----gaaagaatcatactatcaagtcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagag |
397 |
Q |
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| T |
8162754 |
atagtaaaaaatttactatgctgtggaaagaatcatactatcaaggcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagag |
8162655 |
T |
|
| Q |
398 |
aaacgggctgtctttg---------------aggcattggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtatt |
482 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8162654 |
aaacgggctgtctttgcatgtgtttcttttgaggcatcggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtatt |
8162555 |
T |
|
| Q |
483 |
ctttattttcaggcataccttttcttgcaacatgttgc |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8162554 |
ctttattttcaggcataccttttcttgcaacatgttgc |
8162517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 204 - 520
Target Start/End: Original strand, 7316951 - 7317281
Alignment:
| Q |
204 |
gggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagca |
303 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |||| ||||| || ||||||||| | |||||||| |
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| T |
7316951 |
gggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaaaacat-cacataagttcagctgttgaagaatgcaacaaagca |
7317049 |
T |
|
| Q |
304 |
tagtnnnnnnngtaatttggaaagaatcatactatcaagtcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagagaaacgg |
403 |
Q |
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| T |
7317050 |
tagtaataaaagcaattaggaaagaatcatactatcaaggcctagttgattgacagcatatagaaaccgctgatgcagttctggcgaccaagacaaacgg |
7317149 |
T |
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| Q |
404 |
gctgtc---------------tttgaggcattggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtattctttat |
488 |
Q |
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|| || |||||||||| |||||||||||||||||||||||| ||||||||| | ||||| |||||||| | |||||||||| |
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| T |
7317150 |
gccttctttgcaagtgtttcttttgaggcatcagcatcttctctaccccgttttctacattcttgaaccaccaagctttcaacaatttcatattctttat |
7317249 |
T |
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| Q |
489 |
tttcaggcataccttttcttgcaacatgttgc |
520 |
Q |
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| T |
7317250 |
tttcagtcttaccttttcttacaacatgttgc |
7317281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 203 - 520
Target Start/End: Complemental strand, 7219104 - 7218774
Alignment:
| Q |
203 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
302 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||||||||||||||| ||||||||| | |||||||| |||||| |
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| T |
7219104 |
tgggaacatccatgattttcagaatcttttttggcattgcccctgaaaaataagagaaaaacatgcacataagttgagttgta-aagaatacaacaaaga |
7219006 |
T |
|
| Q |
303 |
atagtnnnnnnngtaatttggaaagaatcatactatcaagtcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagagaaacg |
402 |
Q |
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| | | ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| |
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| T |
7219005 |
a-attaacgaaattaattaagaaagaagcatactatcaaggcctagttgattgacagcccatagaaatcgttgatgcaattctggcgaccaagacaaacg |
7218907 |
T |
|
| Q |
403 |
ggctgtc---------------tttgaggcattggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtattcttta |
487 |
Q |
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||| || ||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||| | |||||||| |
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| T |
7218906 |
ggccttctttgcctgtgtttcttttgaggcattatcatcttctctaccccgttttctaatttcttgaaccaccgagcttccaacaatttcatattctttg |
7218807 |
T |
|
| Q |
488 |
ttttcaggcataccttttcttgcaacatgttgc |
520 |
Q |
| |
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||| ||| || |||||||||| |||||||||| |
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| T |
7218806 |
tttgcagtcaaaccttttcttataacatgttgc |
7218774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 520
Target Start/End: Complemental strand, 7244522 - 7244304
Alignment:
| Q |
317 |
aatttggaaagaatcatactatcaagtcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagagaaacgggctgtc------- |
409 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || |
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| T |
7244522 |
aattaggaaagaatcatactatcaaggcctagttgattgacagcccatagaaatcgttgatgcagttctggcgaccaagacaaacgggccttctttgcgt |
7244423 |
T |
|
| Q |
410 |
--------tttgaggcattggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtattctttattttcaggcatacc |
501 |
Q |
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|||||| | || ||||||||||||||||||||||| ||||||||| | ||||| |||||||| | ||||||||||||||| || ||| |
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| T |
7244422 |
ttgtttcttttgagactttatcatcttctctaccccgttttctacattcttgaaccaccaagctttcaacaatttcacattctttattttcagtcacacc |
7244323 |
T |
|
| Q |
502 |
ttttcttgcaacatgttgc |
520 |
Q |
| |
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||||||| ||||||||||| |
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| T |
7244322 |
ttttcttacaacatgttgc |
7244304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 520
Target Start/End: Original strand, 7323840 - 7324058
Alignment:
| Q |
317 |
aatttggaaagaatcatactatcaagtcctagttgattgacagcccatagaaaccgctgatgcagttctggcgaccaagagaaacgggctgtc------- |
409 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||| || || |
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| T |
7323840 |
aattaggaaagaatcatactatcaaggcctagttgattgactgcacatagaaactgctgatgcagttctggcgaccaagacaaactggtcttctttgcaa |
7323939 |
T |
|
| Q |
410 |
--------tttgaggcattggcatcttctctaccccgttttctattagcttgaaccatcgagcttccaacaattgcgtattctttattttcaggcatacc |
501 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||| | |||||||||||||||| | ||| |
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| T |
7323940 |
gtgtttcttttgaggcattagcatcttctctaccccgttttctacattcttgaaccaccaagcttccaacaatttcatattctttattttcagtcgaacc |
7324039 |
T |
|
| Q |
502 |
ttttcttgcaacatgttgc |
520 |
Q |
| |
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|||||| ||||||||||| |
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| T |
7324040 |
gtttcttacaacatgttgc |
7324058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 8163288 - 8163219
Alignment:
| Q |
15 |
atcaacaagaggatatatagaagctaatggagagatacttatattctattctaacaatacaacaagaaat |
84 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
8163288 |
atcaacaagaggatatacagaagctaatggagaaatacttatattctattctagcaatacaacaagaaat |
8163219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 7316663 - 7316716
Alignment:
| Q |
15 |
atcaacaagaggatatatagaagctaatggagagatacttatattctattctaa |
68 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7316663 |
atcaacaagaggatatatagaagctaatggagaaatacttatattctattctaa |
7316716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 7219384 - 7219331
Alignment:
| Q |
15 |
atcaacaagaggatatatagaagctaatggagagatacttatattctattctaa |
68 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
7219384 |
atcaacaagaggatatatagaagctaatgaagaaatacttatattctattctaa |
7219331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 8163201 - 8163171
Alignment:
| Q |
157 |
cacaagctattagagaaataggatagtcaaa |
187 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
8163201 |
cacaagctattagagaaataggatagtcaaa |
8163171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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