View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_6 (Length: 521)
Name: NF16618_low_6
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 40662371 - 40662655
Alignment:
| Q |
15 |
caaaggagagaaacggttattcccattatattcaaagtggaatacttggatttgcaggacgacccacaattcacaagacttgtttcatgatcatgcaaaa |
114 |
Q |
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| T |
40662371 |
caaaggagagaaacggttattcccattatattcaaagtagaatacttggatttgcaggacgacccacaattcacaagacttgtttcatgatcatgcaaaa |
40662470 |
T |
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| Q |
115 |
gggactgaaccacagatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatccttagtgtgtgtacaannnnnnncc |
214 |
Q |
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| T |
40662471 |
gggactgaaccacaaatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatccttagtgtgtgtacaatttttttcc |
40662570 |
T |
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| Q |
215 |
atcacagacttatttgagaatgacaacatcgcaaatttttgatttaccgagacagcaatgtaacaaaaatcttaaagtgtctaat |
299 |
Q |
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| T |
40662571 |
atcacagacttatttgagaatgacaacatcacaggtttttgatttaccgagacagcaatgtaacaaaaaccttaaagtgtctaat |
40662655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 40676029 - 40676114
Alignment:
| Q |
110 |
caaaagggactg--aaccacagatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatcctta |
193 |
Q |
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| T |
40676029 |
caaaagggactgtgaaccataaatcaggattctttcactatttactttctagagcatcttctgtgtattcatatctttgatcctta |
40676114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 40675913 - 40675996
Alignment:
| Q |
15 |
caaaggagagaaacggttattcccattatattcaaagtggaatacttggatttgcaggacgacccacaattcacaagacttgttt |
99 |
Q |
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| T |
40675913 |
caaaggagagaagtggtttttcccattatattcaaagtagaat-ctctgatttgcaggatgatcgacaattcacaaaacttgttt |
40675996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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