View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_low_7 (Length: 511)

Name: NF16618_low_7
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_low_7
NF16618_low_7
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-195)||(34641-34836)
scaffold0003 (2-195)||(41308-41506)
[»] chr2 (3 HSPs)
chr2 (2-195)||(14455449-14455643)
chr2 (215-363)||(923592-923737)
chr2 (434-496)||(22996457-22996517)
[»] chr6 (1 HSPs)
chr6 (2-195)||(27445852-27446050)
[»] chr3 (1 HSPs)
chr3 (149-363)||(46833160-46833357)
[»] chr8 (1 HSPs)
chr8 (207-363)||(27540883-27541035)
[»] chr7 (1 HSPs)
chr7 (307-366)||(45032127-45032186)
[»] chr5 (1 HSPs)
chr5 (307-368)||(4357204-4357264)


Alignment Details
Target: scaffold0003 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 34836 - 34641
Alignment:
Q  2 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||| ||    
T  34836 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgctgctatagtattatatagtacacagaaggaatactctaaaaatatataattatg 34737  T
Q  100 cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||| |||||||||    
T  34736 cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata 34641  T

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Target: scaffold0003; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 41506 - 41308
Alignment:
Q  2 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||  ||||| | ||||||||||||||||| |||||||| ||    
T  41506 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg 41407  T
Q  100 cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||   |||| |||||||||    
T  41406 cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata 41308  T

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Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 14455643 - 14455449
Alignment:
Q  2 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 99  Q
    ||||| |||||||||||||||||  |||||||||||||||||| |||||||||||||||||  ||||| | ||||| ||||||||||||||| |||| ||    
T  14455643 aagtgttgctatattaattttgattaagtcaaatcaaccaaagtgctgctatagtattatatagtacaaagaagga-tactctaaaaatataaaattatg 14455545  T
Q  100 cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||   |||| |||||||||    
T  14455544 cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgcttttctgtcaaagtttataaatgaaatctatatgtggtcata 14455449  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 215 - 363
Target Start/End: Original strand, 923592 - 923737
Alignment:
Q  215 tatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgt-tttttagatttcttta 313  Q
    ||||||||||| ||||||   |||||||||||||||||||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||||||||    
T  923592 tatgtttcaatcactatt---ttaaagtgtgtctctaatcatatgtttttcttcttt-aagagtttggattgaaaaatggtgtctttttagatttcttta 923687  T
Q  314 agagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgca 363  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  923688 agagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgca 923737  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 22996457 - 22996517
Alignment:
Q  434 aataagttatttggatttattcattattaataacttacacatcaacagttagctctatttcat 496  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||    
T  22996457 aataagttatttggatttattcattattaataactt--acatcaatagatagctctatttcat 22996517  T

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Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 27445852 - 27446050
Alignment:
Q  2 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||  ||||| | ||||||||||||||||| |||||||| ||    
T  27445852 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg 27445951  T
Q  100 cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||   |||| |||||||||    
T  27445952 cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata 27446050  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 149 - 363
Target Start/End: Complemental strand, 46833357 - 46833160
Alignment:
Q  149 catgctttgctgtcaaagtttataaatgaagcttataagtggtcataaaactaatgtatcaattactatgtttcaataactattaatttaaagtgtgtct 248  Q
    |||| ||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||    |||| ||||||  ||||||    
T  46833357 catgtttttctgtaaaagtttataaatgaagcctatatgtggtcataaaactaatgtatcaataactatgtttcaat---cattattttaaa--gtgtct 46833263  T
Q  249 ctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgttttttagatttctttaagagtttagatagaaaaatggtgtcttcttagagt 348  Q
    |||||||| ||||||||||| ||||||| || |||||| |||||||||| |          ||| |||||||||||| |||||||||||||| |||||||    
T  46833262 ctaatcatgtgtttttcttc-tttaagagtttcgattg-aaaatggtgtct----------ttttagagtttagataaaaaaatggtgtctttttagagt 46833175  T

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Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 207 - 363
Target Start/End: Complemental strand, 27541035 - 27540883
Alignment:
Q  207 tcaattactatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgtt-ttttaga 305  Q
    ||||||||||||||||||| ||||   ||||||||| ||||| ||||||| |||||||||||||| |||| ||  ||||||||||| ||||  ||||| |    
T  27541035 tcaattactatgtttcaatcacta---atttaaagtatgtctttaatcatgtgtttttcttcttt-aagaattttgattgaaaaatagtgtcgttttata 27540940  T
Q  306 tttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgca 363  Q
     |||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||    
T  27540939 gttctttaagagtttagatagaaaaatggtgtctt-ttatagcttataaatgaatgca 27540883  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 45032127 - 45032186
Alignment:
Q  307 ttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgcaact 366  Q
    |||||||||||| ||||||| ||||| ||||||| | |||||||| ||||| ||||||||    
T  45032127 ttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaact 45032186  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 4357204 - 4357264
Alignment:
Q  307 ttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgcaactga 368  Q
    ||||||||||||||||||| |||||  ||||||| | ||||||| |||||||||||| ||||    
T  4357204 ttctttaagagtttagatataaaaaatgtgtctt-taagagtttggaaatgaatgcagctga 4357264  T

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