View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_low_8 (Length: 469)

Name: NF16618_low_8
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_low_8
NF16618_low_8
[»] chr3 (12 HSPs)
chr3 (155-451)||(30486074-30486368)
chr3 (11-141)||(30485917-30486047)
chr3 (11-143)||(30505702-30505833)
chr3 (219-451)||(30506970-30507197)
chr3 (219-383)||(30522684-30522848)
chr3 (11-105)||(30520690-30520783)
chr3 (11-62)||(30489874-30489925)
chr3 (11-62)||(30516477-30516528)
chr3 (158-196)||(30506920-30506958)
chr3 (72-138)||(30516547-30516613)
chr3 (158-196)||(30522634-30522672)
chr3 (156-197)||(30505858-30505899)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 155 - 451
Target Start/End: Original strand, 30486074 - 30486368
Alignment:
Q  155 taaagtatcatggaatcaatttgctgcttttgcatttgcactcnnnnnnnnncttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  30486074 taaagtatcatggaatcaatttgctgcttttgcatttgcactcttttttttt-ttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 30486172  T
Q  255 tttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaagttaagttgttccgcacatgtgcaatgatagtgttaact 354  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  30486173 tttatattaatcaaaatactgaagaaagttatgcgaagatgg-tatagaaaggcgttctaagttaagttgtttcgcacatgtgcaatcatagtgttaact 30486271  T
Q  355 taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtag 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30486272 taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtag 30486368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 30485917 - 30486047
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttcacttgg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30485917 cacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttatctgctggttagatttaattgttcacttgg 30486016  T
Q  111 atttgatatttttaatattgacataactatt 141  Q
    |||||||||| ||||||||||||||||||||    
T  30486017 atttgatattattaatattgacataactatt 30486047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 30505702 - 30505833
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttcacttgg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||  ||| | ||||||||||| ||||    
T  30505702 cacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttatctgctaatta-aattaattgttcatttgg 30505800  T
Q  111 atttgatatttttaatattgacataactatttg 143  Q
    || | |||||||| ||||||| |||||| ||||    
T  30505801 atgtaatatttttgatattgaaataactttttg 30505833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 451
Target Start/End: Original strand, 30506970 - 30507197
Alignment:
Q  219 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt 317  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |  ||| ||||||||   || ||||||  |    
T  30506970 tcttttaatttaataataattaatagctttcacatttttctattaatcaaaatactgaataaagttatgtggggat-ggtatagagttgcatcctaatat 30507068  T
Q  318 taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaa 417  Q
    |||||||||  ||| |||||||||    |||||| || |||| |||||||| |||||||||||||| |  ||||||  | |||||  |||| ||||||||    
T  30507069 taagttgtttagcatatgtgcaat----gtgttagctaaagacatgtttataccatctcttacatt-aatttttataaatgtttgtccattaagttcaaa 30507163  T
Q  418 ttgtgaagcgaacattgaattgaaatgcttgtag 451  Q
    ||||||| | |||| |||||||||| | ||||||    
T  30507164 ttgtgaaccaaacaatgaattgaaacgtttgtag 30507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 383
Target Start/End: Original strand, 30522684 - 30522848
Alignment:
Q  219 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt 317  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |   || ||||||||   || ||||||       
T  30522684 tcttttaatttaataataattaatagctttcacatttttttattaatcaaaatactgaataaagttatgtgggtat-ggtatagagttgcatcctaataa 30522782  T
Q  318 taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacatt 383  Q
    |||||||||  ||  ||||||||| ||||||||| ||||||| |||||||| |||| |||||||||    
T  30522783 taagttgtttagcttatgtgcaattatagtgttagcttaagacatgtttataccatttcttacatt 30522848  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 30520690 - 30520783
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttca 105  Q
    ||||||||||||| |||||||||| ||||  |||||||||||||||||||||       |||||||||||||| ||  ||| |||||||||||||    
T  30520690 cacagatgttgaggtttttcttgtctcaccattctactaattccatctcaca-atttttcttatttgttatctcctaattaaatttaattgttca 30520783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30489874 - 30489925
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 62  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  30489874 cacagatgttgagtttttttttgtctcaccattctactaattccatctcaca 30489925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30516477 - 30516528
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 62  Q
    |||||||||||||||||| ||||| ||||| |||||||||||| ||||||||    
T  30516477 cacagatgttgagtttttccttgtctcacatttctactaattctatctcaca 30516528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 30506920 - 30506958
Alignment:
Q  158 agtatcatggaatcaatttgctgcttttgcatttgcact 196  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30506920 agtattatggaatcaatttgctgcttttgcatttgcact 30506958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 30516547 - 30516613
Alignment:
Q  72 tatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataact 138  Q
    |||||||||||||||   || ||||||||||||| |||||| | ||||||||||||| |||||||||    
T  30516547 tatttgttatctgctaactaaatttaattgttcatttggatgtaatatttttaatatcgacataact 30516613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 30522634 - 30522672
Alignment:
Q  158 agtatcatggaatcaatttgctgcttttgcatttgcact 196  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30522634 agtattatggaatcaatttgctgcttttgcatttgcact 30522672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 30505858 - 30505899
Alignment:
Q  156 aaagtatcatggaatcaatttgctgcttttgcatttgcactc 197  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  30505858 aaagtattatgtaatcaatttgctgcttttgcatttgcactc 30505899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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