View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16619_low_1 (Length: 268)

Name: NF16619_low_1
Description: NF16619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16619_low_1
NF16619_low_1
[»] chr8 (3 HSPs)
chr8 (7-187)||(32143186-32143366)
chr8 (207-265)||(32143086-32143144)
chr8 (205-258)||(10075599-10075652)
[»] chr7 (4 HSPs)
chr7 (7-75)||(12095124-12095192)
chr7 (210-258)||(31338482-31338530)
chr7 (210-262)||(44821933-44821985)
chr7 (210-258)||(30456498-30456546)
[»] chr1 (2 HSPs)
chr1 (210-258)||(4548695-4548743)
chr1 (210-257)||(7273988-7274035)
[»] chr6 (2 HSPs)
chr6 (207-264)||(18264300-18264357)
chr6 (210-258)||(1497955-1498003)
[»] chr5 (1 HSPs)
chr5 (212-258)||(16889711-16889757)
[»] chr3 (1 HSPs)
chr3 (204-241)||(31713956-31713993)
[»] chr4 (1 HSPs)
chr4 (213-253)||(18628596-18628636)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 32143366 - 32143186
Alignment:
Q  7 atacaccactttctgttattctcattcaataacagaaagtatattcaataaaatttataaggtcgaaaattttcattcattttttgcaaatgtttagcaa 106  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  32143366 atacaccactttctgttatactcatccaataacagaaagtatattcaataaaatttataccgtcgaaaattttcattcattttttgcaaatgtttagcaa 32143267  T
Q  107 actattagacactcgattccaaattctctttcaataacaacttaattaaacgcttgaaggataaccactcatgatataagt 187  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  32143266 actattagatgctcgattccaaattctctttcaataacaacttaattaaacgcttaaaggataagcactcatgatataagt 32143186  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 32143144 - 32143086
Alignment:
Q  207 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaaa 265  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  32143144 aagttaagtcaaactgtttttatacaagttataagcggttttcataaactatcctgaaa 32143086  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 10075652 - 10075599
Alignment:
Q  205 ataagtaaagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    |||| |||||||||||| |||||||| |||||||||||  ||||||||| ||||    
T  10075652 ataattaaagtcaaactatttttatataagttataagctattttcataagctat 10075599  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 12095192 - 12095124
Alignment:
Q  7 atacaccactttctgttattctcattcaataacagaaagtatattcaataaaatttataaggtcgaaaa 75  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12095192 atacaccactttctgttatactcattcaataacagaaagtatattcaataaattttataacgtcgaaaa 12095124  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 31338482 - 31338530
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    ||||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  31338482 taaagtcaaactgtttttatataagttataagttgtttccataaactat 31338530  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 44821933 - 44821985
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaactattctg 262  Q
    |||||||||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  44821933 taaagtcaaattgtttttgtataagttataagctgttttcataagctattctg 44821985  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 30456546 - 30456498
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    |||||||||| |||||| ||| ||||||||||  |||||||||||||||    
T  30456546 taaagtcaaattgttttcatataagttataagtggttttcataaactat 30456498  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 4548695 - 4548743
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4548695 taaagtcaaactgtttttatacaagtcataagctgttttcataagctat 4548743  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 7274035 - 7273988
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaacta 257  Q
    |||||||||| |||||| ||||||||||||||| |||| |||||||||    
T  7274035 taaagtcaaattgttttcatacaagttataagctgtttccataaacta 7273988  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 18264300 - 18264357
Alignment:
Q  207 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaa 264  Q
    ||||||||||||| |||||| |||||||||||||||  ||||| |||||||| |||||    
T  18264300 aagtaaagtcaaattgttttcatacaagttataagctattttcttaaactatcctgaa 18264357  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 1497955 - 1498003
Alignment:
Q  210 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    ||||||||||||||||| |||  |||||||||  |||||||||||||||    
T  1497955 taaagtcaaactgttttcatatgagttataagaagttttcataaactat 1498003  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 16889711 - 16889757
Alignment:
Q  212 aagtcaaactgtttttatacaagttataagccgttttcataaactat 258  Q
    ||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  16889711 aagtcaaactgtttttatagaagctataagctgttttcataagctat 16889757  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 31713956 - 31713993
Alignment:
Q  204 gataagtaaagtcaaactgtttttatacaagttataag 241  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  31713956 gataaataaagtcaaactgttttgatacaagttataag 31713993  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 18628636 - 18628596
Alignment:
Q  213 agtcaaactgtttttatacaagttataagccgttttcataa 253  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataa 18628596  T

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