View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16619_low_2 (Length: 257)
Name: NF16619_low_2
Description: NF16619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16619_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 4650609 - 4650841
Alignment:
| Q |
7 |
ttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttc |
106 |
Q |
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| T |
4650609 |
ttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttc |
4650708 |
T |
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| Q |
107 |
tttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgt |
206 |
Q |
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| T |
4650709 |
tttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgt |
4650808 |
T |
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| Q |
207 |
gtctctggtagtgctggtgctgctccttcatca |
239 |
Q |
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| T |
4650809 |
gtctctggtagtgctggtgctgctccttcatca |
4650841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 23679594 - 23679487
Alignment:
| Q |
118 |
tagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgtgtctctggtag |
217 |
Q |
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| T |
23679594 |
tagccgtaatgtccttctgtttgagtggtcttcctgttaagaacacaaatttgacaccaagatttaccagtttgttgtacaatttttgtgtctctggtag |
23679495 |
T |
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| Q |
218 |
tgctggtg |
225 |
Q |
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| T |
23679494 |
tgctggtg |
23679487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 23680759 - 23680683
Alignment:
| Q |
48 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgt |
124 |
Q |
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| T |
23680759 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttgtttcaagttcttagctgt |
23680683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 4646346 - 4646441
Alignment:
| Q |
109 |
tcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaattttt |
204 |
Q |
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| T |
4646346 |
tcaagttcttagctgtaatttctttctgtttgagtggtctgcctgttaagaacgcaatcttgataccaagagacaacaatttattgtacaattttt |
4646441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 41872538 - 41872709
Alignment:
| Q |
57 |
tagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgtta |
156 |
Q |
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|||||||||||||| ||||||| ||||| ||| ||||||||||| | |||| ||||| ||||| |||| |||||||||| || |||||| |||| |
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| T |
41872538 |
tagaaaacttacttgcaaattagtttttcccgtgtatggtagccagcaagtctcaaattcttggctgttatgttcttctgtttgtttgctcttccagtta |
41872637 |
T |
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| Q |
157 |
agaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgtgtctctggtagtgctggtgctg |
228 |
Q |
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| T |
41872638 |
agaatacaatcttgataccaagagacaatagtttattgtaaagtttttgagattctggcagtgctggtgctg |
41872709 |
T |
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