View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16619_low_3 (Length: 227)
Name: NF16619_low_3
Description: NF16619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16619_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 32142916 - 32143105
Alignment:
| Q |
38 |
caaccctacgacatcgttccaaaatatgcctcttctcttcaattagccctccaatttttcgacgtccaaaaatgtaacataatctaatctcgtctattct |
137 |
Q |
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| T |
32142916 |
caaccctacgacatcgttccaaaatatgcctcttctcttcaattagccctccaatttttcgacgtccaaaaatgtaacataatctaatctcgtctattct |
32143015 |
T |
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| Q |
138 |
tagataccgtttagattgacttgcattaacacttatcgaactctttgagagagacatgttcataaacagatttcagaatagtttatgaaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
32143016 |
tagataccgtttagattgacttgcattaacacttatcgaactctttgagagagacatgttcataaacagttttcaggatagtttatgaaa |
32143105 |
T |
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