View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16620_low_1 (Length: 735)

Name: NF16620_low_1
Description: NF16620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16620_low_1
NF16620_low_1
[»] chr3 (1 HSPs)
chr3 (18-725)||(52582694-52583398)
[»] chr7 (1 HSPs)
chr7 (385-434)||(43242935-43242984)


Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 52582694 - 52583398
Alignment:
Q  18 ttattttgtcggaatttatcgacgtgcactatatgtgattgttgtaaatttgagaccctaactcgattcctacccataaaagaaaaagtgaaagaaattt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52582694 ttattttgtcggaatttatcgacgtgcactgtatgtgattgttgtaaatttgagaccctaacttgattcctacccataaaagaaaaagtgaaagaaattt 52582793  T
Q  118 gtcgccttagtctctactactataataaatgcttaagaggctaaattaacatatcattagnnnnnnnggaaaggggtagtttttggataaggaattactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||       |||||||||||||||||||||||||||||||||    
T  52582794 gtcgccttagtctctactactataataaatgcttaagaggctaaattaacatat---tagaaaaaaaggaaaggggtagtttttggataaggaattactt 52582890  T
Q  218 ggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaaatcagacatcaaattagcatttcattaataaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582891 ggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaaatcagacatcaaattagcatttcattaataaga 52582990  T
Q  318 caagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagcacgaagaattgctacagat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52582991 caagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagcacgaagaattgctacagat 52583090  T
Q  418 gtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtctgtctattattatctctct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52583091 gtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtctgtctattattatctctct 52583190  T
Q  518 caaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttatttgggacattatggcatctcttaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52583191 caaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttatttgggacattatggcatctcttaa 52583290  T
Q  618 gctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttcaaaagatgatactacttcttcc 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52583291 gctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttcaaaagatgatactacttcttcc 52583390  T
Q  718 atttgatg 725  Q
    ||||||||    
T  52583391 atttgatg 52583398  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 43242984 - 43242935
Alignment:
Q  385 tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctct 434  Q
    ||||||||||||||||||||||  | ||||||| |||||||||| |||||    
T  43242984 tcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctct 43242935  T

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