View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16620_low_2 (Length: 462)
Name: NF16620_low_2
Description: NF16620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16620_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 1006735 - 1006351
Alignment:
| Q |
11 |
cataggttgtggctacaagaattaaagttgtatgaaggtatgagtttggacgtgggtattttaaaaaatatgggtataaggaaaaatagtgtaatatttt |
110 |
Q |
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| T |
1006735 |
cataggttgtggctacaagaattaaagttgtatgaaggtatgggtttggacgcgggtattttaaaaaatatgggtataaggacaaatagtgtaatatttt |
1006636 |
T |
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| Q |
111 |
atatagatcctaccaattgatatccctatatgatatttcccttttttaatgaacaaaagggggataacctgaagaaacaaaattataaacctctagcaaa |
210 |
Q |
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| T |
1006635 |
atatagatcctaccaattcatatccctatatgatatttccctttttttatgaacaaaagggggataacccgaagaaacgaaattataaacctctagcaaa |
1006536 |
T |
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| Q |
211 |
tagggtactttaattatcagctacaaactcagaataacaaaacgtaggaaaataataaattgtatgaacattgnnnnnnntatgcatatgcatcgattga |
310 |
Q |
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| T |
1006535 |
cagggtactttaattatcagctacaaactcagaataacaaaac------------------gtatgaacattgaaaaaaatatgcatatgcatcgattga |
1006454 |
T |
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| Q |
311 |
ttcaaattctctttgctgaaagcatctgcgacttgattcgcctcgcagaggatatgctttccctacacacatcagatctgctttactagtttccaaacta |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1006453 |
ttcaaattctctttgctgaaagcatctgcgacttgattcgccttgcagaggatatgctttccctacacacatccgatctgctttactagtttccaaacta |
1006354 |
T |
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