View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16620_low_4 (Length: 290)
Name: NF16620_low_4
Description: NF16620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16620_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 69 - 282
Target Start/End: Original strand, 27235535 - 27235748
Alignment:
| Q |
69 |
tcaacccaatccataagaccataaacggaaaatgtggttagttttgataggtttcgaccacctatgactatgggtccaatgtttttgtttctacttatga |
168 |
Q |
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| T |
27235535 |
tcaacccgatccataagaccataaacagaaaatgtggttagttttgataggtttcgaccacctatgactacgggtccaatgtttttgtttctactgatga |
27235634 |
T |
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| Q |
169 |
agctattgctgttcaaatttgttagcttccaaaaaacggttattccccaatgctattgtttcgaaatgaatatccgaaaacattgaataaaaatgataaa |
268 |
Q |
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| T |
27235635 |
agctattgctcttcaaatttgttagcttccaaaaaacagttattccccgatgctattgtttcgaaatgaatatccgaaaacattaaataaaaatgataaa |
27235734 |
T |
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| Q |
269 |
aagagaggtatttt |
282 |
Q |
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| T |
27235735 |
aagagaggtatttt |
27235748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 27212085 - 27212281
Alignment:
| Q |
96 |
gaaaatgtggttagttttgataggtttcgaccacctatgactatgggtccaatgtttttgtttctacttatgaagctattgctgttcaaatttgttagct |
195 |
Q |
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| T |
27212085 |
gaaaatgaggttagtcttgataggtttcgaccacttatggttatgggtccaatgtttttgtttctactgatgaagctattgctgttcaaa-ttgttagct |
27212183 |
T |
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| Q |
196 |
tccaaaaaacggtt---attccccaatgctattgtttcgaaatgaatatccgaaaacattgaataaaaatgataaaaagagaggtattttgaaatacc |
290 |
Q |
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| T |
27212184 |
tccaaaaaacagttctgattcatcagttctattatttcgaaatgaattaccgaaaagattgaataaaaatgataaaaagaaaggtattttgaaatacc |
27212281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 27235425 - 27235475
Alignment:
| Q |
22 |
accattgcttcaaatgaaacagtaaaccaatctcagcaggaacagagtcaa |
72 |
Q |
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| T |
27235425 |
accactgcttcaaatgaaacaacaaaccaatctcagcaggaacagagtcaa |
27235475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 12071741 - 12071661
Alignment:
| Q |
210 |
attccccaatgctattgtttcgaaatgaatatccgaaaacattgaataaaaatgataaaaagagaggtattttgaaatacc |
290 |
Q |
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| T |
12071741 |
attcaccaacgctattgtttcgaaatgaatatccaaaaagattgaataaaagtgataaaaagagaggtattttgaaatacc |
12071661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 37580918 - 37580988
Alignment:
| Q |
2 |
attcggcaaatacccaccataccattgcttcaaatgaaacagtaaaccaatctcagcaggaacagagtcaa |
72 |
Q |
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| T |
37580918 |
attcggcaaacaaccaccaacccactgcttcaaatgaaacaacaaacccatctcagcaggaacagagtcaa |
37580988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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