View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16621_high_1 (Length: 420)
Name: NF16621_high_1
Description: NF16621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16621_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 4328641 - 4328912
Alignment:
| Q |
17 |
gaactaacacaaaggattttcatatactcaccgtaattagagcctttggcactacaatgagtccaccatggcatccccgc---tacttcggtcatttgga |
113 |
Q |
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| T |
4328641 |
gaactaatacaaaggattttcatatactcaccgtaattagagcctttggcaccacaatgagtccaccatggcatccccgccgctacttcggtcatttgga |
4328740 |
T |
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| Q |
114 |
ccgactatgagactaattctcaattcgactgattaaacaatattttatccttccaagggttactcccctatgattcaaactacagtttctcagatactcc |
213 |
Q |
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| T |
4328741 |
ccgactatgagactaattctcaattcgactgattaaacaatattttattcttccaagggttactcccctatgattcaaactacagtttctcagatactcc |
4328840 |
T |
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| Q |
214 |
tatggggtcaaattgcttctacttgatcaacattatagtccaatctctctctcatttagtctctaaagtata |
285 |
Q |
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| T |
4328841 |
tgtgggggcaaattgcttctacctgaccaacattatagtccaatctctctctcatttagtctctaaagtata |
4328912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 275 - 403
Target Start/End: Original strand, 4328926 - 4329054
Alignment:
| Q |
275 |
tctaaagtatagttcctactagggattaacataatgaattttcatatactttagagaacaagataaattgtacatactttaacaattatttgtaatgttc |
374 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4328926 |
tctaaagtatagttcctactagggaataacataatgaattttcatatactttagagaacaagataaattgtacatactttaacaattatttgttatgttc |
4329025 |
T |
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| Q |
375 |
atatactttaaaaactgaattatggttta |
403 |
Q |
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| T |
4329026 |
atatactttaaaaacagaattatggttta |
4329054 |
T |
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