View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16621_high_3 (Length: 216)
Name: NF16621_high_3
Description: NF16621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16621_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 39992814 - 39992997
Alignment:
| Q |
1 |
aattactgctatgtttcttgnnnnnnnagtcctccaatttggttcatcacagtgttcttcctcctgttccatactcatggtaagcaagtagtaaatctta |
100 |
Q |
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| T |
39992814 |
aattactgctatgtttcttgtttttttagtcctccaatttggttcatcacagtgttcttcctcctgttccatactcatggtaagcaagtagtacatctta |
39992913 |
T |
|
| Q |
101 |
taattaaggtcaaatcatatattacttactattatatgtgtgtatatacttacaatttcatattttcatgcaccattatgtatg |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39992914 |
taattaaggtcaaatcatatattacttactattatatgtgtgtgtatacttacaatttcatattttcatgcaccattatgtatg |
39992997 |
T |
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