View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_high_13 (Length: 344)
Name: NF16622_high_13
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_high_13 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 15802138 - 15801808
Alignment:
| Q |
14 |
caatatctgaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctg |
113 |
Q |
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| T |
15802138 |
caatatctaaccacaacatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctg |
15802039 |
T |
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| Q |
114 |
ccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacact |
213 |
Q |
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| T |
15802038 |
ccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacaca |
15801939 |
T |
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| Q |
214 |
aaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaata |
313 |
Q |
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| T |
15801938 |
aaccagaatacgacaggaaaagttattgtaacaccatcatggaatataaccggatccagaaacgttaaggactcaacagaacttgggaaagctgagaata |
15801839 |
T |
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| Q |
314 |
acattatgagtttgatacgcaaagtgactac |
344 |
Q |
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| T |
15801838 |
acatgatgagtttgatacgcaaagtgactac |
15801808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 341
Target Start/End: Complemental strand, 15794320 - 15794012
Alignment:
| Q |
33 |
cataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacact |
132 |
Q |
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| T |
15794320 |
catagttagcaacaacaacaatgatcatgatacggtttatgggttctatgattgtcggggtgacatcacaggaagtttctgtcaattttgtatcaacact |
15794221 |
T |
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| Q |
133 |
gctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaa |
232 |
Q |
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| T |
15794220 |
gttgttagagatattgcaaaatattgtcccaacagtgtctcagctatgatatggtatgatttatgcatcatgggttacactaaccagaatccctcgggaa |
15794121 |
T |
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| Q |
233 |
aagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgatacg |
332 |
Q |
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| T |
15794120 |
gagttattgtaactccatcatggaatgtaaccggatctaaaatcgttaaagactcgacagaacttgcgaaatctgagaataacatgatgagtttgatacg |
15794021 |
T |
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| Q |
333 |
caaagtgac |
341 |
Q |
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| T |
15794020 |
aaaagtgac |
15794012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 33 - 344
Target Start/End: Complemental strand, 15807738 - 15807427
Alignment:
| Q |
33 |
cataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacact |
132 |
Q |
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| T |
15807738 |
cataggtagcaacaacagcaattataatgatacggtttatgggttctatgattgtctaggtcctaacacaagaagtttctgtcaattttgcatcaacact |
15807639 |
T |
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| Q |
133 |
gctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaa |
232 |
Q |
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||| |||||||||| || || |||||| |||||||| |||||| | |||||||||||||||||| |||||||||| |||||||||||| | |||||| |
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| T |
15807638 |
gcttttagagaaattgcaaaatattgtcccaacagtgtctcggctattatatggtatgatgtatgcatcatgggttatactaaccagaatccctcaggaa |
15807539 |
T |
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| Q |
233 |
aagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgatacg |
332 |
Q |
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| T |
15807538 |
gagtttttctagaaccatcatggaatgtaaccggatccaaaaacgttaaggactcaacagaacttgggaaagctgagaatagcatgacgagtttgatacg |
15807439 |
T |
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| Q |
333 |
caaagtgactac |
344 |
Q |
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| T |
15807438 |
caaagtgactac |
15807427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 70 - 305
Target Start/End: Complemental strand, 15815562 - 15815327
Alignment:
| Q |
70 |
tatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtg |
169 |
Q |
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| T |
15815562 |
tatggattctacgattgtcgtggtgacgtaacaggaagtttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcg |
15815463 |
T |
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| Q |
170 |
tttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatc |
269 |
Q |
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| T |
15815462 |
tctcggctatgatatggtatgacatatgtgtcatcggttattctgaccataatacatcaggaaaaatttctgttaccccatcatggaatttaaccggaac |
15815363 |
T |
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| Q |
270 |
cagaaacgttaaggactcaacagaacttgggaaagc |
305 |
Q |
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| T |
15815362 |
caaaaacacgaaggactcaactgaacttgagaaagc |
15815327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 15700313 - 15700230
Alignment:
| Q |
84 |
ttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacag |
167 |
Q |
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| T |
15700313 |
ttgtcgggctgacgtcacaggaagtttctgtcaattttgtatcaacactgctgtcaaagaaattgctcaacgttgtcttaacag |
15700230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 15724886 - 15724810
Alignment:
| Q |
229 |
ggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagc |
305 |
Q |
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||||||||| | |||||||| ||||||||||| ||||| |||| | ||| ||||||||||||||| |||||||||| |
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| T |
15724886 |
ggaaaagttgtcgtaacaccgtcatggaatattactggctccaatagcgtaaaggactcaacagaaattgggaaagc |
15724810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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