View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16622_high_18 (Length: 263)

Name: NF16622_high_18
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16622_high_18
NF16622_high_18
[»] chr8 (20 HSPs)
chr8 (1-218)||(42126295-42126512)
chr8 (87-218)||(13884488-13884619)
chr8 (88-217)||(13884706-13884835)
chr8 (80-218)||(11867899-11868036)
chr8 (87-218)||(29714541-29714672)
chr8 (88-218)||(42126601-42126731)
chr8 (113-218)||(2554067-2554172)
chr8 (134-216)||(14996678-14996761)
chr8 (88-218)||(29714759-29714889)
chr8 (157-207)||(2554002-2554052)
chr8 (154-207)||(14996608-14996661)
chr8 (154-207)||(29714691-29714744)
chr8 (127-218)||(15862541-15862632)
chr8 (87-185)||(43416262-43416360)
chr8 (129-214)||(26745959-26746044)
chr8 (154-207)||(42126532-42126585)
chr8 (134-214)||(26745309-26745389)
chr8 (154-204)||(13884638-13884688)
chr8 (227-256)||(14996600-14996629)
chr8 (186-218)||(15862422-15862454)
[»] chr7 (16 HSPs)
chr7 (86-218)||(28715640-28715772)
chr7 (83-218)||(28715859-28715994)
chr7 (85-200)||(30862215-30862330)
chr7 (87-218)||(41985909-41986040)
chr7 (89-218)||(6474281-6474411)
chr7 (83-218)||(6474498-6474632)
chr7 (129-218)||(30862437-30862526)
chr7 (88-218)||(47373462-47373594)
chr7 (113-218)||(47373679-47373784)
chr7 (87-160)||(41986183-41986256)
chr7 (154-204)||(41986058-41986108)
chr7 (154-207)||(47373612-47373665)
chr7 (134-214)||(6271188-6271268)
chr7 (129-214)||(38408121-38408206)
chr7 (134-214)||(38407478-38407558)
chr7 (141-214)||(6270272-6270345)
[»] chr1 (16 HSPs)
chr1 (86-218)||(10824586-10824718)
chr1 (84-218)||(37189565-37189699)
chr1 (113-218)||(18844484-18844589)
chr1 (87-256)||(22683140-22683311)
chr1 (89-218)||(15825738-15825865)
chr1 (88-213)||(37189368-37189492)
chr1 (86-206)||(18844677-18844798)
chr1 (86-218)||(19056368-19056500)
chr1 (113-216)||(10824393-10824496)
chr1 (88-218)||(19056150-19056280)
chr1 (131-218)||(22683358-22683445)
chr1 (154-206)||(22683290-22683342)
chr1 (154-207)||(10824514-10824567)
chr1 (154-207)||(19056295-19056348)
chr1 (154-204)||(18844608-18844658)
chr1 (154-200)||(37189495-37189541)
[»] chr4 (12 HSPs)
chr4 (82-218)||(39161282-39161418)
chr4 (85-218)||(55173470-55173603)
chr4 (86-218)||(39161504-39161636)
chr4 (86-218)||(47096798-47096928)
chr4 (87-206)||(50509357-50509476)
chr4 (81-207)||(55173327-55173454)
chr4 (86-218)||(47097017-47097146)
chr4 (129-218)||(37996106-37996195)
chr4 (154-207)||(47096947-47097001)
chr4 (154-206)||(39161436-39161488)
chr4 (5-87)||(40971208-40971289)
chr4 (134-214)||(9738164-9738243)
[»] chr2 (21 HSPs)
chr2 (87-254)||(2916377-2916545)
chr2 (88-256)||(16973064-16973234)
chr2 (90-218)||(44594455-44594583)
chr2 (86-206)||(44594246-44594367)
chr2 (87-218)||(40987656-40987787)
chr2 (113-218)||(38982774-38982879)
chr2 (87-218)||(16973281-16973412)
chr2 (83-206)||(38982552-38982675)
chr2 (86-206)||(11533673-11533794)
chr2 (113-218)||(24125876-24125975)
chr2 (113-218)||(2916594-2916699)
chr2 (86-218)||(13559519-13559650)
chr2 (94-218)||(40987863-40987987)
chr2 (113-218)||(24126146-24126245)
chr2 (154-207)||(16973213-16973266)
chr2 (154-207)||(44594383-44594436)
chr2 (141-218)||(13559357-13559434)
chr2 (154-207)||(38982702-38982755)
chr2 (154-207)||(2916526-2916579)
chr2 (154-207)||(24125804-24125857)
chr2 (88-155)||(24125670-24125737)
[»] scaffold0060 (1 HSPs)
scaffold0060 (87-218)||(22922-23053)
[»] chr6 (14 HSPs)
chr6 (84-214)||(24798843-24798973)
chr6 (88-214)||(2216799-2216925)
chr6 (87-218)||(24798624-24798755)
chr6 (93-256)||(11643754-11643919)
chr6 (84-207)||(11643977-11644099)
chr6 (86-218)||(18494732-18494862)
chr6 (86-182)||(24690353-24690449)
chr6 (88-218)||(18494949-18495079)
chr6 (90-174)||(24690607-24690691)
chr6 (154-207)||(11643898-11643951)
chr6 (153-205)||(24798770-24798822)
chr6 (154-207)||(24690504-24690557)
chr6 (134-214)||(9954853-9954933)
chr6 (129-214)||(9955590-9955675)
[»] chr3 (13 HSPs)
chr3 (83-256)||(51663245-51663420)
chr3 (87-218)||(51663467-51663598)
chr3 (82-218)||(40244619-40244756)
chr3 (113-218)||(46003465-46003570)
chr3 (129-218)||(20537967-20538056)
chr3 (89-218)||(20538151-20538280)
chr3 (86-218)||(46003246-46003378)
chr3 (87-218)||(40364040-40364171)
chr3 (154-207)||(46003393-46003446)
chr3 (91-199)||(40364194-40364301)
chr3 (154-200)||(20538076-20538122)
chr3 (87-150)||(40244873-40244936)
chr3 (154-207)||(51663399-51663452)
[»] scaffold0781 (1 HSPs)
scaffold0781 (88-214)||(5256-5382)
[»] chr5 (3 HSPs)
chr5 (83-218)||(21249357-21249492)
chr5 (154-204)||(21249511-21249561)
chr5 (172-218)||(21249579-21249625)
[»] scaffold0034 (1 HSPs)
scaffold0034 (140-204)||(108047-108111)
[»] scaffold0098 (1 HSPs)
scaffold0098 (5-87)||(46342-46423)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42126295 - 42126512
Alignment:
Q  1 tttggttttctctaaaatatcatttgcttttcataaagtttataaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126295 tttggttttctctaaaatatcatttgcttttcataaagttcataaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatc 42126394  T
Q  101 acccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 200  Q
    |||||||  || ||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  42126395 acccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcgctactagttttagtc 42126494  T
Q  201 ctttctggtagtttctct 218  Q
    ||||||||||||||||||    
T  42126495 ctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 13884488 - 13884619
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||| |||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  188 actagttttagtcctttctggtagtttctc 217  Q
    ||| ||||||||||||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 11868036 - 11867899
Alignment:
Q  80 taattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgtttt 179  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  11868036 taattttaggcttattcaatcacctggtc-cttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgtttt 11867938  T
Q  180 gcttcgttactagttttagtcctttctggtagtttctct 218  Q
    | || || ||||||||||||||||| || ||||||||||    
T  11867937 gatttgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 29714541 - 29714672
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||| |||| || |||||| ||||||||||    
T  29714641 tactagctttaatcatttctgttagtttctct 29714672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  188 actagttttagtcctttctggtagtttctct 218  Q
    |||| |||||||| |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 2554172 - 2554067
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||    
T  2554172 aacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttctgttagt 2554073  T
Q  213 ttctct 218  Q
    ||||||    
T  2554072 ttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctggtagtttct 216  Q
    ||||| |||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 29714889 - 29714759
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    ||||||||  |||||| |||  || ||||||||| ||| | | |||||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  188 actagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||| ||| ||  |||||||||    
T  29714789 actagttttagtcatttatgtcagtttctct 29714759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  157 accaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 14996608 - 14996661
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttctg 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 15862632 - 15862541
Alignment:
Q  127 tctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    |||||||||| | ||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   ||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctct 15862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||  ||||  || ||||||||| ||| ||| |||||  | |||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 26746044 - 26745959
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  |||||||||| ||||||    
T  26746044 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttctgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 42126532 - 42126585
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||| ||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagtcttttctg 42126585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 26745309 - 26745389
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  26745309 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 13884638 - 13884688
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 204  Q
    |||||||||||| || | ||||||||||| |||| ||||||||||||||||    
T  13884638 tgtaccaatttgatctcttatgttttgctccgttcctagttttagtccttt 13884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 14996600 - 14996629
Alignment:
Q  227 ttaacttatgtactaatttggtcccctatg 256  Q
    ||||||||||||||||||||||||||||||    
T  14996600 ttaacttatgtactaatttggtcccctatg 14996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 15862422 - 15862454
Alignment:
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||||| |||||||||||||    
T  15862422 ttactagttttagtcctttatggtagtttctct 15862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||| |||||||||||||||||  || ||||||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||||||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 28715994 - 28715859
Alignment:
Q  83 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    ||||||||||||||||| |||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  28715994 ttttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgct 28715895  T
Q  183 tcgttactagttttagtcctttctggtagtttctct 218  Q
      || ||||||||||||| |||||| ||||||||||    
T  28715894 cagtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  85 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 184  Q
    |||||||||||||||||  ||||  || ||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  185 gttactagttttagtc 200  Q
    ||||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 41985909 - 41986040
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||| | |||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    ||||| ||||||||||||| | ||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 6474281 - 6474411
Alignment:
Q  89 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatg-ttttgcttcgtt 187  Q
    ||||||||||| ||| | |  || ||||||||| ||| |||||||||| | ||||||||||||||| || ||||||||||||||||| |||||||| |||    
T  6474281 gcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtt 6474380  T
Q  188 actagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||| |||||| ||||||||||    
T  6474381 actagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 6474632 - 6474498
Alignment:
Q  83 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    ||||||||||||||||||||||| |  || ||||||||| ||| ||| ||||||||  ||||||||||| ||||||| ||||| |||| |||| ||||||    
T  6474632 ttttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgct 6474534  T
Q  183 tcgttactagttttagtcctttctggtagtttctct 218  Q
      |||||||||||||||||||| || ||||||||||    
T  6474533 ctgttactagttttagtcctttatgttagtttctct 6474498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 30862526 - 30862437
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||| |||||| ||||||||||    
T  30862526 tcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 47373462 - 47373594
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 185  Q
    ||||||||||||||| || |  || ||||||||| ||| |||||||||| | | |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    || |||||||||||| ||| || ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctct 47373594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 47373784 - 47373679
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| |||||| || ||||    
T  47373784 aacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctttatgttagt 47373685  T
Q  213 ttctct 218  Q
    ||||||    
T  47373684 ttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtacca 160  Q
    |||||||||||||||||||||| || |||||||||  || |||||||||| | |||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 204  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 47373612 - 47373665
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagtcgtttctg 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 6271268 - 6271188
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| |||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  |||||||||| ||||||    
T  6271268 ttggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttctgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 38408206 - 38408121
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38408206 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 38407478 - 38407558
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38407478 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 6270272 - 6270345
Alignment:
Q  141 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||  ||| |||||| ||||||    
T  6270272 cctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagtttcggtcttttctgttagttt 6270345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 10824718 - 10824586
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||||||| |||||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctct 10824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 37189699 - 37189565
Alignment:
Q  84 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 183  Q
    ||||| |||||||||||||| |||  || ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  37189699 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgctt 37189600  T
Q  184 cgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||| |||||||||||||||||    
T  37189599 cgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 18844484 - 18844589
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18844484 aacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatttctggtagt 18844583  T
Q  213 ttctct 218  Q
    ||||||    
T  18844584 ttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 256
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||||||||| |   | ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  187 tactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 256  Q
    ||||||||||||||||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 15825865 - 15825738
Alignment:
Q  89 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 188  Q
    |||||||||||||||||||  || ||||||||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggt--cctaactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  189 ctagttttagtcctttctggtagtttctct 218  Q
     ||||||||||||||| |  ||||||||||    
T  15825767 ttagttttagtcctttttattagtttctct 15825738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||||||  | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtc-cttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  188 actagttttagtcctttctggtagtt 213  Q
    |||||||||||||||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 184  Q
    |||||||||||||||||||| |  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  185 gttactagttttagtcctttct 206  Q
    ||||||||||||||| ||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 19056500 - 19056368
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||| |||||  || ||||||||| ||| | | |||||||| ||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||| ||||||  |||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctct 19056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 10824393 - 10824496
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| |||||  ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  10824393 aacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttctgttagt 10824492  T
Q  213 ttct 216  Q
    ||||    
T  10824493 ttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 19056150 - 19056280
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    |||||||||||||||| | |  || ||||||||| ||| | | |||||||| |||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  188 actagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||| |||||| ||||||||||    
T  19056250 actagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  131 aatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 19056348 - 19056295
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctg 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 204  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 37189541 - 37189495
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 200  Q
    |||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagtc 37189495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39161282 - 39161418
Alignment:
Q  82 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgc 181  Q
    |||||||||||||||||||||||| |   | ||||||||| | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39161282 attttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgc 39161381  T
Q  182 ttcgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||||||||||||  |||||||||    
T  39161382 ttcgttactagttttagtcctttctgaaagtttctct 39161418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  85 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 184  Q
    |||||||||||||||||||||||  || ||||||||| ||| |||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  185 gttactagttttagtcctttctggtagtttctct 218  Q
    |||||| ||||||||| ||| || ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 39161636 - 39161504
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    ||||||||||||| || |||||| || ||||||||| ||| | | |||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||    
T  39161636 taggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccg 39161537  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||| |||||||||||||||||| ||||||||||    
T  39161536 ttattagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||||| | |  || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaatttgc-cccctatgttttgcttcg 47096895  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||| ||||||||||||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 50509476 - 50509357
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||||| | | |  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  187 tactagttttagtcctttct 206  Q
    ||||| |||||||| |||||    
T  50509376 tactaattttagtcttttct 50509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 55173327 - 55173454
Alignment:
Q  81 aattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgtttt 179  Q
    |||||| ||||||||| |||| |||||| || ||||||||| ||| ||| |||||||| ||||||||||||||||||  |||||||| ||||||| ||||    
T  55173327 aatttttggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatatttt 55173426  T
Q  180 gcttcgttactagttttagtcctttctg 207  Q
    ||| ||||||||||||||||||||||||    
T  55173427 gctccgttactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 47097146 - 47097017
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||| ||| |  || ||||||||| ||| ||||||||| || | |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||| ||| || ||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 37996106 - 37996195
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||    
T  37996106 tcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttattagttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  154 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctg 207  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 206  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 40971208 - 40971289
Alignment:
Q  5 gttttctctaaaa-tatcatttgcttttcataaagtttataaaatggaagagttttggtatttagtgtgacataaataatttta 87  Q
    ||||||||||||| ||||||||| ||||||  ||||| ||| |||| ||| ||||| ||||||||||||||||||||| |||||    
T  40971208 gttttctctaaaaatatcatttggttttca--aagttcatacaatgaaagggttttagtatttagtgtgacataaatattttta 40971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 9738164 - 9738243
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9738164 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac-agtttcggtcctttttgttagttt 9738243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 254
Target Start/End: Original strand, 2916377 - 2916545
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||||||||| |  || ||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  187 tactagttttagtcctttctggtagtttctct-nnnnnnnnttaacttatgtactaatttggtccccta 254  Q
    ||||||||||| ||||||||| ||||||||||         ||||||||||||| ||||||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    ||||||||||||||||||||  || ||||||||| ||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  188 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 256  Q
    |||||||||| | ||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  90 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 189  Q
    ||||||||||||||||||   | || |||||| ||| |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  190 tagttttagtcctttctggtagtttctct 218  Q
    ||||||||||| |||||||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 184  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  185 gttactagttttagtcctttct 206  Q
    ||||||||||||||| ||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||| ||||| |||||  || ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||| ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 38982879 - 38982774
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| |||||||||||| || ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| |||||||||||    
T  38982879 aacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttctggtagt 38982780  T
Q  213 ttctct 218  Q
    ||||||    
T  38982779 ttctct 38982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 16973412 - 16973281
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||||||  |||  || ||||||||| ||| |||||||||||| |||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||| ||||||  |||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 38982552 - 38982675
Alignment:
Q  83 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    |||| |||||| ||||||||||| |   | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  38982552 tttttggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgct 38982651  T
Q  183 tcgttactagttttagtcctttct 206  Q
    ||||| ||||||||||||||||||    
T  38982652 tcgttgctagttttagtcctttct 38982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 11533794 - 11533673
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgttttgcttc 184  Q
    |||||||||||||||| | |||  || ||||||| | ||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  185 gttactagttttagtcctttct 206  Q
     ||||||||||||||| |||||    
T  11533694 attactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 2916699 - 2916594
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||| ||| |||| |||||||  |||||||||||| |||||||||| ||||    
T  2916699 aacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgttagt 2916600  T
Q  213 ttctct 218  Q
    ||||||    
T  2916599 ttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 13559650 - 13559519
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||| |||||  || ||||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||| | || ||||||  |    
T  13559650 taggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctg 13559552  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||| ||||||| ||| || ||||||||||    
T  13559551 ttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 40987987 - 40987863
Alignment:
Q  94 ttcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 193  Q
    ||||||||||||||  || ||||||||||||| |||||||||| | | ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  194 tttagtcctttctggtagtttctct 218  Q
    ||||||| |||||| ||||||||||    
T  40987887 tttagtcatttctgttagtttctct 40987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  141 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||| |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 2916526 - 2916579
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||| ||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagtcttttctg 2916579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 24125857 - 24125804
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagtcatttctg 24125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttg 155  Q
    |||||||||| ||| |||||  || ||||||||| ||| |||||||||| | ||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 23053 - 22922
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    |||||||||||||||||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||||||| ||||||||||    
T  22953 tactagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 24798973 - 24798843
Alignment:
Q  84 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 183  Q
    |||||||||||||||||||||| |  || || |||||| ||| ||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  24798973 tttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctt 24798874  T
Q  184 cgttactagttttagtcctttctggtagttt 214  Q
    ||||||||||||||||||||||| |||||||    
T  24798873 cgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 2216925 - 2216799
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  188 actagttttagtcctttctggtagttt 214  Q
    | ||||||||||| ||| || ||||||    
T  2216825 attagttttagtcatttatgttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 24798624 - 24798755
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||| |  ||||  || |||||||||  || | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||| |||||| ||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  93 attcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 192  Q
    |||||||||||||||  || || |||||| ||| |||||||||| | |||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  193 ttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 256  Q
    |||||||||| |||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 11644099 - 11643977
Alignment:
Q  84 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    ||||||||||||||||||||||||  || ||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ct 11644002  T
Q  183 tcgttactagttttagtcctttctg 207  Q
    | |||||||||||||||| ||||||    
T  11644001 ttgttactagttttagtcttttctg 11643977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||||||||||||||||  |||  || ||||| ||| ||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||||||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 18495079 - 18494949
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    |||||||||||||| |  ||  || ||||||||| ||||| | |||||| | || ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  188 actagttttagtcctttctggtagtttctct 218  Q
    | |||||||||| ||||||| ||||||||||    
T  18494979 attagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  90 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctat 174  Q
    |||||||||||||||| |  || ||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 11643898 - 11643951
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctg 11643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  153 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 205  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||||||||||||| |||||||||||||   ||| ||||||||||||||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 9954853 - 9954933
Alignment:
Q  134 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9954853 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtcctttatgttagttt 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 9955675 - 9955590
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 214  Q
    |||| ||||| |||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  9955675 tcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 256
Target Start/End: Original strand, 51663245 - 51663420
Alignment:
Q  83 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    |||| |||||||| |||||||||||  || ||||||||| ||| | | ||| |||| | |||||||||||||||| |||||| |||||||||||||||||    
T  51663245 tttttggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgct 51663344  T
Q  183 tcgttactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 256  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||    
T  51663345 tcgttactagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 51663598 - 51663467
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    ||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    |||||||||||||| |||||| ||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 40244619 - 40244756
Alignment:
Q  82 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttgg-tcccctatgttttg 180  Q
    |||| ||||||||||||||| ||| |  || ||||||||| ||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  40244619 atttcaggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttg 40244718  T
Q  181 cttcgttactagttttagtcctttctggtagtttctct 218  Q
    ||| |||||||||||||||| |||||| ||||||||||    
T  40244719 ctttgttactagttttagtcatttctgttagtttctct 40244756  T

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Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 46003570 - 46003465
Alignment:
Q  113 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 212  Q
    ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  46003570 aacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtcctttctggtagt 46003471  T
Q  213 ttctct 218  Q
    ||||||    
T  46003470 ttctct 46003465  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 20537967 - 20538056
Alignment:
Q  129 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  20537967 tcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctttctattagtttctct 20538056  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 20538280 - 20538151
Alignment:
Q  89 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 188  Q
    |||||||||||||||||||   | || |||||| ||| |||||||||| | |||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  189 ctagttttagtcctttctggtagtttctct 218  Q
    |||||||||||| |||||| ||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctct 20538151  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 46003246 - 46003378
Alignment:
Q  86 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 185  Q
    |||| |||||||||||||||||   | ||||||||| ||| | | |||||||| |||||||||||||||||| ||||||||||| ||||||| || |  |    
T  46003246 taggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctg 46003345  T
Q  186 ttactagttttagtcctttctggtagtttctct 218  Q
    |||| |||||||||||||| || ||||||||||    
T  46003346 ttacaagttttagtcctttttgttagtttctct 46003378  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 40364040 - 40364171
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 186  Q
    |||||||||| |||||||  |  || ||||||||| ||||||| |||||||| || ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  187 tactagttttagtcctttctggtagtttctct 218  Q
    || ||||||||||| ||| || ||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctct 40364171  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  91 ttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 190  Q
    ||||||||||||  |||  || ||||||||| ||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  191 agttttagt 199  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 200  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  87 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata 150  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||||| |||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 51663399 - 51663452
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 207  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttctg 51663452  T

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Target: scaffold0781 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 5382 - 5256
Alignment:
Q  88 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 187  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  188 actagttttagtcctttctggtagttt 214  Q
    | ||||||||||| ||| || ||||||    
T  5282 attagttttagtcatttatgttagttt 5256  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 21249357 - 21249492
Alignment:
Q  83 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 182  Q
    |||| |||||||||||||||| |||  || | | ||||| ||| |||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||    
T  21249357 ttttcggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgct 21249456  T
Q  183 tcgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||||||| ||||||||| ||||||||||    
T  21249457 tcgttactagttttaatcctttctgttagtttctct 21249492  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  154 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 204  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  172 tatgttttgcttcgttactagttttagtcctttctggtagtttctct 218  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

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Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  140 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 204  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||||||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

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Target: scaffold0098 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 46342 - 46423
Alignment:
Q  5 gttttctctaaaat-atcatttgcttttcataaagtttataaaatggaagagttttggtatttagtgtgacataaataatttta 87  Q
    |||||||||||||| |||||||| ||||||  ||||| ||| |||| ||||||||| |||||||| |||||||||||| |||||    
T  46342 gttttctctaaaattatcatttggttttca--aagttcatacaatgaaagagttttagtatttagcgtgacataaatattttta 46423  T

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