View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_high_2 (Length: 685)
Name: NF16622_high_2
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 24200536 - 24200089
Alignment:
| Q |
19 |
atatatatacctgacttgtattgcaatttgggttgattgttaatttgaatgatgagtatctataattgattttagtggttttgttcatcatgcaaattat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24200536 |
atatatatacctgacttgtattgcaatttgggttgattgttaatttgaatgatgagtatctataattgattttagtggttttgttcatcatgcaaattat |
24200437 |
T |
|
| Q |
119 |
ctttggaattaatatgaagtattgatagaaacacggaacactacatgtaagcaccgataataatttaacaaaatagaagtggttaatgtaagttgtaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24200436 |
ctttggaattaatatgaagtattgatagaaacacggaacactacatgtaagcaccgataataattttacaaaatagaagtggttaatgtaagttttaacc |
24200337 |
T |
|
| Q |
219 |
atatgtatcactgtatcagtgttctggcagtgtcggacattaacatgtgacagatatcatacaagccttaaatctgaaacgtcgatgctatgtatcgaaa |
318 |
Q |
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|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24200336 |
atatgtatca--------gtgttctgtcagtgtcggacattgacatgtgacagatatcatacaagccttaaatctgaaatgtcgatgctatgtatcgaaa |
24200245 |
T |
|
| Q |
319 |
tattgactatataagtgtatatatgtagcatttcagctacattttaatatcaaaatgaccatttggtctatcagaaaagctgtgctgcgactatcagtaa |
418 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24200244 |
tactgactatataagtgtatatatgtagcatttcagctacattttaatatc-aaatgaccatttggtctatcagaaaagctgtgctgcgactatgagtaa |
24200146 |
T |
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| Q |
419 |
cattaactcagcaaagaaaatatatttcactggatgatgtattataggaaaatattt |
475 |
Q |
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| T |
24200145 |
cattaactcaacaaagaaaatatatttcactggatgatgtattataggaaaatattt |
24200089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 553 - 674
Target Start/End: Complemental strand, 3680441 - 3680320
Alignment:
| Q |
553 |
aatccttttacttttaaggagtttcgtccgatttccctcttaggatgtttatacaaacttcttgctaaagtgttggccgatagattgtctaaagtgatga |
652 |
Q |
| |
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||||| |||||||| |||||||||||||| |||||||| |||||||| | || ||||||||||||||||||||||||| |||| |||| ||| | |||| |
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| T |
3680441 |
aatccgtttactttgaaggagtttcgtcctatttcccttttaggatgcctttataaacttcttgctaaagtgttggccggtagaatgtcaaaacttatga |
3680342 |
T |
|
| Q |
653 |
gctctattatttcttcttctca |
674 |
Q |
| |
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| | |||||||| |||||||| |
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| T |
3680341 |
gtacaattatttcatcttctca |
3680320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 9e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 490 - 668
Target Start/End: Original strand, 6230034 - 6230212
Alignment:
| Q |
490 |
ggtaatgaggtggtgccgaggannnnnnngtgctactttgttactcttataccaaaggtcaacaatccttttacttttaaggagtttcgtccgatttccc |
589 |
Q |
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||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6230034 |
ggtaatgaggtggtgccgaagagttttttgtcctactttgttactcttataccaaaggtcaacaatccttttactttgaaggagtttcgtccgatttccc |
6230133 |
T |
|
| Q |
590 |
tcttaggatgtttatacaaacttcttgctaaagtgttggccgatagattgtctaaagtgatgagctctattatttcttc |
668 |
Q |
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| T |
6230134 |
ttttaggatgtttatacaaacttcttgctaaagtgttggccgatagattgtctaaagtgatgagttctattatttcttc |
6230212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 490 - 674
Target Start/End: Original strand, 38968891 - 38969075
Alignment:
| Q |
490 |
ggtaatgaggtggtgccgaggannnnnnngtgctactttgttactcttataccaaaggtcaacaatccttttacttttaaggagtttcgtccgatttccc |
589 |
Q |
| |
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|||||||||||||||||||||| || ||| ||||||||| | || |||||| | || |||||||| | ||| |||||||||||||| ||||||| |
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| T |
38968891 |
ggtaatgaggtggtgccgaggagttttttgtcctattttgttactttaatcccaaagattaaaaatcctttcattttgaaggagtttcgtcctatttccc |
38968990 |
T |
|
| Q |
590 |
tcttaggatgtttatacaaacttcttgctaaagtgttggccgatagattgtctaaagtgatgagctctattatttcttcttctca |
674 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||| |||| |||| ||| | ||||||||||||||||| |||||||| |
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| T |
38968991 |
gcttaggatgcctttacaaacttcttgctaaagtgttggccggtagaatgtcaaaatttatgagctctattatttcatcttctca |
38969075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 526 - 629
Target Start/End: Original strand, 55351417 - 55351520
Alignment:
| Q |
526 |
tttgttactcttataccaaaggtcaacaatccttttacttttaaggagtttcgtccgatttccctcttaggatgtttatacaaacttcttgctaaagtgt |
625 |
Q |
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||||||||| | || || ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| || | |||||||||||||||||||||| |
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| T |
55351417 |
tttgttactttaatccctaaggtaaacaatcctttcactttgaaggagtttcgtcctatttccctcttagggtgcctttacaaacttcttgctaaagtgt |
55351516 |
T |
|
| Q |
626 |
tggc |
629 |
Q |
| |
|
|||| |
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|
| T |
55351517 |
tggc |
55351520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 493 - 629
Target Start/End: Original strand, 44682326 - 44682460
Alignment:
| Q |
493 |
aatgaggtggtgccgaggannnnnnngtgctactttgttactcttataccaaaggtcaacaatccttttacttttaaggagtttcgtccgatttccctct |
592 |
Q |
| |
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||||||||||||||||||| || ||| ||||||||| | || ||||||||||| |||||||| ||||| ||||||| || ||| || ||||||| |
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| T |
44682326 |
aatgaggtggtgccgaggagtttcttgtcctattttgttactttaattccaaaggtcaataatcctttcactttgaaggagtatcatcccatatccctct |
44682425 |
T |
|
| Q |
593 |
taggatgtttatacaaacttcttgctaaagtgttggc |
629 |
Q |
| |
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|||||||| | |||||||||||||| |||||||||| |
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| T |
44682426 |
taggatgtctctacaaacttcttgc--aagtgttggc |
44682460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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