View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_high_24 (Length: 201)
Name: NF16622_high_24
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 13675034 - 13674912
Alignment:
| Q |
66 |
tataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagttagacgcaattcactacaacgggagaagatcaatatgtccaggtt |
163 |
Q |
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| T |
13675034 |
tataaaatacgacaaagaaccttgaacatttatctagtagatttgaataccaagttagacgcaattcactacaacgggagaaaatcaatatgtccaggtt |
13674935 |
T |
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| Q |
164 |
tcaagttgatatctcactgtctg |
186 |
Q |
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| T |
13674934 |
tcaagttgatatctcactgtctg |
13674912 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 41755235 - 41755327
Alignment:
| Q |
30 |
taaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagtta |
120 |
Q |
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| T |
41755235 |
taaacttctataaattgacgtgtttgtttcatttgttataaaagacaacaaagaaccatgaacacttatcaagtaaatttgaataccaagtta |
41755327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 588754 - 588700
Alignment:
| Q |
31 |
aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaac |
85 |
Q |
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| T |
588754 |
aaacttctataaattgaaatgtttggttcatttattataaaacacaacaaagaac |
588700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 27059421 - 27059490
Alignment:
| Q |
31 |
aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatcc |
100 |
Q |
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| T |
27059421 |
aaacttctataaattggtgtgtttggttcatttgctgtaaaacacaacaaaaaaccgtgaacacttatcc |
27059490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 18905765 - 18905646
Alignment:
| Q |
29 |
gtaaacttctataaattgatacgtttggttaattt-gttataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagttagacgc |
125 |
Q |
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| T |
18905765 |
gtaaacttcaataaattgaagtgtttggttcattttgtgttaaaacacaactatgaaccatgaacatttatccagtagatcagaacaccaagttagccgc |
18905666 |
T |
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| Q |
126 |
aattcactacaacgggagaa |
145 |
Q |
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| T |
18905665 |
agtttactacaacgagagaa |
18905646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 21218171 - 21218060
Alignment:
| Q |
30 |
taaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatccagtagattt--gtaccaagttagacgcaa |
127 |
Q |
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|||||||||||| |||| | |||||||| ||| | ||||||| | || ||| || | |||||||||||||||||||| | ||||||||||| ||||| |
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| T |
21218171 |
taaacttctatatattggtgtgtttggttcattcgctataaaaaaaaaaaaaaaaacatgaacatttatccagtagatctaaataccaagttagccgcaa |
21218072 |
T |
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| Q |
128 |
ttcactacaacg |
139 |
Q |
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| T |
21218071 |
tttactacaacg |
21218060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 27842652 - 27842719
Alignment:
| Q |
30 |
taaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatc |
99 |
Q |
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| T |
27842652 |
taaacttgtataaattgat--gtttgattcatttgttgtaaaacacaacaaagaaccatgaacacttatc |
27842719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5747895 - 5747947
Alignment:
| Q |
31 |
aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaaga |
83 |
Q |
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|||||||||||||||| | |||||||| ||||||| ||||| |||||||||| |
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| T |
5747895 |
aaacttctataaattggtgtgtttggttcatttgttgtaaaacacaacaaaga |
5747947 |
T |
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