View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_high_7 (Length: 406)
Name: NF16622_high_7
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 164 - 389
Target Start/End: Original strand, 4940358 - 4940583
Alignment:
| Q |
164 |
aaagaaaatgtgttcctatcattgctttaatttcaattgcgtattgatatgggtttagttatttattacaaaaaagttcaaaaatcataaatggactttg |
263 |
Q |
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| T |
4940358 |
aaagaaaatgtgttcctatcattgctttaatttcaattgcgtattgatatgggtttagttatttattacaaaaaagttcaaaaatcataaatggactttg |
4940457 |
T |
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| Q |
264 |
tttgattaaaagtggtaccaggaacaaatggtatcaactttgaagatagatacagccactaattttgtattatctgcctaaaaacattaacctaattata |
363 |
Q |
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| T |
4940458 |
tttgattaaaagtggtaccaggaacaaatggtatcaactttgaagatagatacagccactaattttgtattatctgcctacaaacattaacctaatcata |
4940557 |
T |
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| Q |
364 |
gacttttccctctaccataacctatg |
389 |
Q |
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| T |
4940558 |
gacttttccctctaccataacctatg |
4940583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 4940249 - 4940374
Alignment:
| Q |
19 |
tattggttgtgtgttgatagtacaaaacnnnnnnnnngataacgagggtacatgaaaattaaactctactaacaataatacttttttgnnnnnnnnntgt |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4940249 |
tattggttgtgtgttgatagtacaaaactttttttttgataacgagggtacatgaaaattaaactctactaacaataatacttttttgaaaaaaaaatgt |
4940348 |
T |
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| Q |
119 |
tagaattttaaagaaaaagtgttcct |
144 |
Q |
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| T |
4940349 |
tagaattttaaagaaaatgtgttcct |
4940374 |
T |
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