View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_10 (Length: 390)
Name: NF16622_low_10
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 33382705 - 33383054
Alignment:
| Q |
20 |
agagaagtgagactctaatacatagctagattgtttcatccttgagatgttgtgattgaagatctgcttgcataatttttgggcaggccaggtgttgcga |
119 |
Q |
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| T |
33382705 |
agagaagtgagactctaatacatagctagattgtttcatcctttagatgtt-tgattaaagatctgcttgcataatttttgggcagg-----tgttgcga |
33382798 |
T |
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| Q |
120 |
aacttctcaaagggagtaaccttgtacgtactcacctagtaatctcttcgatagctaaaatgtttctaatttttattttatcaagttacaacaatctcaa |
219 |
Q |
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| T |
33382799 |
aacttctcaaagggagtaacctggtacgtactcacctagtaatctcttcgatagctaaaatgtttctaatttttattttatcaagttacaacaatctcaa |
33382898 |
T |
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| Q |
220 |
ggtgtttcttttccatcatgtctaccaaagaaattattggctctggatttgatgttcatgactacagaaaactatttcggtttgaaggtaatcacttcaa |
319 |
Q |
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| T |
33382899 |
ggcatttcttttccatcatgtctaccaaagaaattattggctctggatttgatgttcctgactacagaaaactacttcggtttgatggtaatcacttcaa |
33382998 |
T |
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| Q |
320 |
aagatggtaacacaagatggtgtccttcttaacaacaaaaaggttgccaatgtttt |
375 |
Q |
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| T |
33382999 |
aagatggtaacacaagatggtgtccttcttgacaacataaaggttgccaatgtttt |
33383054 |
T |
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