View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_12 (Length: 378)
Name: NF16622_low_12
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 4757699 - 4758007
Alignment:
| Q |
19 |
attcctgcctccactatcatagccttgttcctgaagaaagaatacacacgttagatacaaagaaggaaagcatgttttaatttggtcaaagtttggtcag |
118 |
Q |
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| T |
4757699 |
attcctgcctccactatcatagccttgttcctgaagaaagaatacacacgttagatacaaagaaggaaagcatgttttaatttggtcaaagtttggtcag |
4757798 |
T |
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| Q |
119 |
aaacaaatatttacattattctcaaagtcagcataaactagtcaagagctgaacaatgctataggctaaattatttgaagcatctttcagagtaaagtca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4757799 |
aaacaaatatttacattattctcaaagtcagcataaactagtcaagagctgaacaatgctataggctaaattatttgaagcatctttcagagtaaagtca |
4757898 |
T |
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| Q |
219 |
atgggaatnnnnnnnttaatgtgttggataattgaggtcaataaaagacataaaattgtcattaagatcataaagaaatgtgatgaactacctacctaca |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4757899 |
atgggaataaaaaaattaatgtgttggataattgaggtcaataaaagacataaaattgtcattaagatcataaagaaatgtgatgaactacctacctaca |
4757998 |
T |
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| Q |
319 |
ctgtactat |
327 |
Q |
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|| |||||| |
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| T |
4757999 |
ctatactat |
4758007 |
T |
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