View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_13 (Length: 365)
Name: NF16622_low_13
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 34132065 - 34132260
Alignment:
| Q |
12 |
aaaggtaaaatttactagattacacattcattcttcttgtaaaaatattaaagcttacacattcttgaaactac----atagtgcaattggaatatcaca |
107 |
Q |
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| T |
34132065 |
aaaggtaaaatttactagattacacattcattcttcttgtaaaaatattaaagcttacacattcttgaaactacgtaaatagtgcaattggaatatcaca |
34132164 |
T |
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| Q |
108 |
agtaacgagaaaggaagacagcttttgaacaaaaattacataatcactcagaagaaaaatattcttgctttggaaaaatatatacatctgaattga |
203 |
Q |
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| T |
34132165 |
agtaacgagaaaggaggacagcttttgaacaaaaattacataatcactcagaagaaaaatattcttgctttggaaaaatatatacatctgaattga |
34132260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 34134162 - 34134311
Alignment:
| Q |
195 |
ctgaattgataattgtactagtaacttaaaatacttgtgtctttttcaaatatttttcatacatattagatccggatgcagttttcga-nnnnnnnnnca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
34134162 |
ctgaattgataattgtactagtaacttaaaatacttgtgtctttttcacatatttttcatacatattagatccggatgcagttttcgattttttttttca |
34134261 |
T |
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| Q |
294 |
cgtgagaaaaataggataagagaatggtgggatattcaaatacaatgtct |
343 |
Q |
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| T |
34134262 |
tgtgagataaataggataagagaatggtgagatattcaaatacaatgtct |
34134311 |
T |
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