View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_14 (Length: 359)
Name: NF16622_low_14
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 40434976 - 40435308
Alignment:
| Q |
13 |
aatatgtattttggtgggaattgattttctgagtgctccacataaggatttggtgtccagtatttccagatacaattccaatccnnnnnnnntt-atctt |
111 |
Q |
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| T |
40434976 |
aatatgtattttggtgggaattgattttctgagtgctccacgtaaggatttggtgtccagtatttccagatacaattccaatccaaaaaaaatttatcta |
40435075 |
T |
|
| Q |
112 |
gagagtttcaaatgataacacagttcaacaaattacttgcgcttgaatatacnnnnnnnnnatgtgaaaagtcaaaaagggaaccagagctaaaccttgc |
211 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
40435076 |
gagagtttcacatgataacacagttcaacaaattacttgcgcttgaatatactttttcattatgtgaaaagtcaaaaagggaaccagaggtaaaccttgc |
40435175 |
T |
|
| Q |
212 |
ataaactaaaattcaggaacctttttatggttggaaggggtttgaaaaatataaataaaactctcctaatttccggattcatgcatgcatagtctcgtgt |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40435176 |
ataaactaaaattcaggaacctttttatggctggaaggggtttgaaaaatataaataaaactctcctaatttccggattcatgcatgcatagtctcgtgt |
40435275 |
T |
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| Q |
312 |
atatatgctgcaagcttcgccacttatatttat |
344 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40435276 |
atatatgctgcaagcttcgccacttatatttat |
40435308 |
T |
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