View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_17 (Length: 315)
Name: NF16622_low_17
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 55954496 - 55954217
Alignment:
| Q |
16 |
cattttcctatttgattattcccttcaaaaaattatcgtcagcacttgtaacaaaaattcattgtcagcactttattctatttgagatcatccaatatat |
115 |
Q |
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| T |
55954496 |
cattttcctatttgattattcccttcaaaaaattatcgtcagcacttgtaacaaaaattcattgtcagcactttattctatttgagatcatccaatatat |
55954397 |
T |
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| Q |
116 |
ttcccttttgctatgcattttgcaaacatagatcctctgcaactacaatacaatcatattttgttgtcatattctagactttttgtataaattaaaatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55954396 |
ttcccttttgctatgcattttgcaaacatagatcctctgcaactacaatacaatcatattttgttgtcatattctagactttttgtataaattaaaatgt |
55954297 |
T |
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| Q |
216 |
aacactatccaacgttgtgcagcagatgcgatacatatttattgctagaacagaaaaagtttgccacattcatttaactt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55954296 |
aacactatccaacgttgtgcagcagatgcgatacatatttattgctagaacagaaaaagtttgccacattcatttaactt |
55954217 |
T |
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