View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_18 (Length: 276)
Name: NF16622_low_18
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 28601886 - 28602157
Alignment:
| Q |
8 |
caacacagagccacatcgtcaccgcaacattcacggtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcgaattaa |
107 |
Q |
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| T |
28601886 |
caacacaaagccacatcgtcatcgcaacattcacagtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcgaattaa |
28601985 |
T |
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| Q |
108 |
tcacagtctcatacacgataata--acacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgacatttcc |
205 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601986 |
tcacagtctcatacacgataataacacacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgacatttcc |
28602085 |
T |
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| Q |
206 |
aacaaatgatac----------taacagttatgttccattacatcattgacatgaaacaaaggattaaaatg |
267 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28602086 |
aacaaatgatactcatttatcttaacagttatgttccattacatcattgacatgaaacaaaggattaaaatg |
28602157 |
T |
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