View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16622_low_23 (Length: 244)
Name: NF16622_low_23
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_23 |
 | |
|
| [»] chr3 (14 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 6478977 - 6479204
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6478977 |
acttcagtagtaaaaatgttgatgaccttgtgaaagaacttaatattgcactcaattctatcaaccatgtgctggaagaagcagagataaagcagtacca |
6479076 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6479077 |
aatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatctactgatgcaatgctaaataag |
6479176 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6479177 |
ctgaaagctgaatctgaaccacttacca |
6479204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 8590751 - 8590539
Alignment:
| Q |
29 |
ataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgt |
128 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| |||||||||| | || ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
8590751 |
ataatgttgatgaccttgtgaaagaactcaatattgcacttgattctatcaacgaagtactggacgaagcagagataaagcagtaccgaagcaaatatgt |
8590652 |
T |
|
| Q |
129 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
8590651 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgctaaataagctgaaagctaaa |
8590552 |
T |
|
| Q |
229 |
tctgaaccactta |
241 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8590551 |
tctgaaccactta |
8590539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 8455688 - 8455461
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
||||||||||| | ||||| |||| ||||| |||||||||||||||||||||| |||||||||||| || || || ||||||||||||||||||||| | |
|
|
| T |
8455688 |
acttcagtagtaacaatgttgatgcccttgcgaaagaacttaatattgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtacca |
8455589 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8455588 |
aaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgctaaataac |
8455489 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
8455488 |
ctgaaagcagaatctgaaccacttacca |
8455461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 6553433 - 6553660
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
|||| |||||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||| || || || ||||||||||||||||||||| | |
|
|
| T |
6553433 |
actttagtagtaacaatgttgatgaacttgtgaaagaacttaatattgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtacca |
6553532 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6553533 |
aaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgcaatgataaataag |
6553632 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
6553633 |
caaaaagctgaatctgaaccacttacca |
6553660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 6737024 - 6736797
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
||||||||||| | ||||| |||| |||| |||||||||||||| ||||||| |||||||||||| || || || ||||||||||||||||||||| | |
|
|
| T |
6737024 |
acttcagtagtaacaatgttgatgctcttgcgaaagaacttaataatgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtacca |
6736925 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6736924 |
aaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatttctactgatgcaatgctaaataag |
6736825 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6736824 |
gtgaaagctgaatctgaaccacttacca |
6736797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 6519157 - 6519384
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
||||||||||| | ||||| |||| ||||| |||||||||| || | ||| | |||||||||||||||||| |||||||||||| | ||||||||| | |
|
|
| T |
6519157 |
acttcagtagtgacaatgttgatgcccttgcgaaagaacttgatcataaactcaattctatcaaccatgtgcttgaagaagcagagctgaagcagtacca |
6519256 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
6519257 |
aaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgatatataag |
6519356 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6519357 |
ttgaaagctgaatctgaaccacttacca |
6519384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 6948309 - 6948076
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
|||| |||||| | ||||| ||||||||||||||||||||| || ||||||| |||||||||| || ||||| ||||||||||||||||||||| | |
|
|
| T |
6948309 |
actttagtagtaacaatgttgatgaccttgtgaaagaacttcattctgcacttgactctatcaacctagtactggacgaagcagagataaagcagtacca |
6948210 |
T |
|
| Q |
117 |
aagcatatatgtgaa------gaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgcta |
210 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6948209 |
aaagaaatatgtgaatgtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgcta |
6948110 |
T |
|
| Q |
211 |
aataatctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
6948109 |
aataagctgaaagctgaatctgaaccacttacca |
6948076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 5281637 - 5281466
Alignment:
| Q |
65 |
cacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgttta |
164 |
Q |
| |
|
|||||| |||||| || || ||||||||||||||||| || ||||||| |||||| |||||| ||||||||||||||||| |||||||||| ||| || |
|
|
| T |
5281637 |
cacttaattctataaatcaagtgctggaagaagcagaacaaatgcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtata |
5281538 |
T |
|
| Q |
165 |
tgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaacc |
236 |
Q |
| |
|
||| ||||||||| | || ||||||||| |||| || ||| || ||||| ||||||| |||||||||||| |
|
|
| T |
5281537 |
tgaggcagaccaaattttcgatgagattgctactgacgcacaactgaataagctgaaagatgaatctgaacc |
5281466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 5299707 - 5299587
Alignment:
| Q |
72 |
ttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagca |
171 |
Q |
| |
|
||||||||||||||| || |||||||| |||| |||||| ||| ||||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
5299707 |
ttctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagca |
5299608 |
T |
|
| Q |
172 |
gaccaactattagatgagatt |
192 |
Q |
| |
|
|| ||||| || ||||||||| |
|
|
| T |
5299607 |
gatcaacttttggatgagatt |
5299587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 5251145 - 5250981
Alignment:
| Q |
72 |
ttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagca |
171 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||| ||| ||||||| || |||||||||||||||||||| ||||||||| || ||||| | |
|
|
| T |
5251145 |
ttctatcaaccatgtgttggaagaagcggagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggtt |
5251046 |
T |
|
| Q |
172 |
gaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaacc |
236 |
Q |
| |
|
||||| || |||||||||||| | || |||||| || || || ||||||||||||||| |||| |
|
|
| T |
5251045 |
gaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctgaatctcaacc |
5250981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 5269032 - 5268948
Alignment:
| Q |
72 |
ttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||| | ||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
5269032 |
ttctatcaaccatgtgttggaagaagctgagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
5268948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 8479979 - 8480045
Alignment:
| Q |
129 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
195 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8479979 |
gaagaattgacttgatgaacttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
8480045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 4387996 - 4388080
Alignment:
| Q |
72 |
ttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
156 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||| ||||||||| ||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4387996 |
ttctatcaaccgtgtgttggaagaagcggagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacat |
4388080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 6918063 - 6917938
Alignment:
| Q |
72 |
ttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagca |
171 |
Q |
| |
|
||||||||| | ||||| || || |||||| ||||||||||| ||| | | | |||||||| ||||||||||| || ||||| | || ||||||| | |
|
|
| T |
6918063 |
ttctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaacacgaggtatatgaagta |
6917964 |
T |
|
| Q |
172 |
gaccaactattagatgagatttctac |
197 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
6917963 |
gaccaacttctagatgtgatttctac |
6917938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 6472 - 6699
Alignment:
| Q |
17 |
acttcagtagttataatgtcgatgaccttgtgaaagaacttaatattgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacga |
116 |
Q |
| |
|
|||| |||||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||| || || || ||||||||||||||||||||| | |
|
|
| T |
6472 |
actttagtagtaacaatgttgatgaacttgtgaaagaacttaatattgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtacca |
6571 |
T |
|
| Q |
117 |
aagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataat |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6572 |
aaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgcaatgataaataag |
6671 |
T |
|
| Q |
217 |
ctgaaagctgaatctgaaccacttacca |
244 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
6672 |
caaaaagctgaatctgaaccacttacca |
6699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 41068368 - 41068482
Alignment:
| Q |
61 |
attgcacttagttctatcaaccatgtgctggaagaagcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttg |
160 |
Q |
| |
|
|||||||| | |||||||||||||||| |||||||||||||| || | |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41068368 |
attgcactcaattctatcaaccatgtgttggaagaagcagagctataacagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgttg |
41068467 |
T |
|
| Q |
161 |
tttatgaagcagaccaa |
177 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
41068468 |
tt--tgaagcagaccaa |
41068482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 19936232 - 19936185
Alignment:
| Q |
148 |
cttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
19936232 |
cttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
19936185 |
T |
|
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