View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_3 (Length: 574)
Name: NF16622_low_3
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 12 - 556
Target Start/End: Original strand, 7330172 - 7330715
Alignment:
| Q |
12 |
agcagagaacagaaaggggccaacacaaattctgttatcttcacaaccacatcatagggagaaaacctatgccccaagtccccaacaaaagctaaaaagc |
111 |
Q |
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| T |
7330172 |
agcagagaacagaaaggggccaacacaaattctgttatcttcacaaccacatcatagggagaaaacctatgccccaagtccccaacaaaagctaaaaagc |
7330271 |
T |
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| Q |
112 |
acggcactacataaacaagcaatctctcagtcccaagaccattcataaaacagacacggggacaccttcagtctactcaaactccacctccacgatacca |
211 |
Q |
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| T |
7330272 |
atggcactacataaacaagcaatctctcggtcccaagaccattcataaaacagacacggggacaccttcagtctactcaaactccacctccacgatacca |
7330371 |
T |
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| Q |
212 |
cctttatctcatccaacaaaatcttggcattattatttatagcctcatttgcaaaaattatcacatttctagcttttcaaataatccataatattgcatg |
311 |
Q |
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| T |
7330372 |
cctttatctcatccaacaaaaccttggcattattatttatagcctcatttgcaaaaattatcacatttctagcttttcaaataatccataatattgcatg |
7330471 |
T |
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| Q |
312 |
ccaagtcaacccatagcccttccagattttcttacttttagcttccctactcaaacactagaacaggacaaacaaatttggtccacatttaaaggcaaaa |
411 |
Q |
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| T |
7330472 |
ccaagtcaacccata-cccttccagattttcttacttttagcttccctactcaaacactagaacaggacaaacaaatgtggtccacatttaaaggcaaaa |
7330570 |
T |
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| Q |
412 |
tcacaatgcnnnnnnnggtgaagagacgtttcctcattaccaacactccaaacacactcgtgaatcttcaattgtaataacttgtcgatgcaccaaattg |
511 |
Q |
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| T |
7330571 |
tcacaatgcaaaaaaaggtgaagagacgtttcctcattaccaacactccaaacacactcgtgaatcttcaattgtaataacttgtcgatgcaccaaattg |
7330670 |
T |
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| Q |
512 |
ctttctgttgggatttaatcatgaagaagttgccaagaaaaaacc |
556 |
Q |
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| T |
7330671 |
ctttctgttgggatttaatcatgaagaagttgccaagaaaaaacc |
7330715 |
T |
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