View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16622_low_4 (Length: 559)

Name: NF16622_low_4
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16622_low_4
NF16622_low_4
[»] chr8 (2 HSPs)
chr8 (1-546)||(31599462-31599990)
chr8 (434-496)||(30525219-30525281)
[»] chr4 (2 HSPs)
chr4 (447-496)||(1460468-1460518)
chr4 (415-488)||(9928771-9928844)
[»] chr3 (2 HSPs)
chr3 (410-496)||(30130797-30130883)
chr3 (436-496)||(50196900-50196960)
[»] chr7 (1 HSPs)
chr7 (447-496)||(23972473-23972522)
[»] chr5 (1 HSPs)
chr5 (447-496)||(8402009-8402058)
[»] chr1 (3 HSPs)
chr1 (415-480)||(25685712-25685777)
chr1 (436-512)||(35536769-35536846)
chr1 (432-480)||(10645788-10645836)
[»] scaffold1432 (1 HSPs)
scaffold1432 (433-477)||(968-1012)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 31599462 - 31599990
Alignment:
Q  1 aaaagcacagcaagaacaaaggaaggaaagtgtgagtatgagaatgtcttagatgataacagtatttaagattttcacaagaggggtctcatgattcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31599462 aaaagcacagcaagaacaaaggaaggaaagtgtgagtatgagaatgtcttagatgataacagtatttaagattttcacaagaggggtctcatgattcctg 31599561  T
Q  101 tacatagcatttaaaacctcgactaccaaagcataaagctgggacataacatttaaaaccctaattctccctccattcccaccnnnnnnnnnnnnnccac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||    
T  31599562 tacatagcatttaaaacctcgactaccaaagcataaagctgggacataacatttaaaaccctaattctccctccattcccacctttttgtttttttccac 31599661  T
Q  201 ttattacaatgtttttctttaacgttcacttattacaatacaatgcccttttaagtgtaaaaatttaatgttactacnnnnnnngtcccataagtataag 300  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  31599662 ttattacaatgtttttctttaacgttcacttattacaatgcgatgcccttttaagtgtaaaaatttaatgttactactttttttgtcccataagtataag 31599761  T
Q  301 tatatataactgtcatattt--acacacaaaaattgttgatatttagttatactatccaatannnnnnngaaaattcggtatttgacccctgttgaagtt 398  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||       ||||||            |||||||||||||    
T  31599762 tatatataactgtcatatttacacacacaaaaattgttgatatttagttatactatccaatatttttttgaaaat------------ccctgttgaagtt 31599849  T
Q  399 gtttgtcattagtcctacattgctgagatttatgggttgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttggaatgagatga 498  Q
    ||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31599850 gtttgtcattagtc-------tctgagatttatgggttgttgaatgtataaatatgtttgagtactttcatcctttgagctaatttttggggtgagatga 31599942  T
Q  499 agtccatttaacatcccaagcatcaatcaatcaaccggtagttaatga 546  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  31599943 agtccatttaacatcccaagcatcaatcaatcaaccagtagttaatga 31599990  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 30525219 - 30525281
Alignment:
Q  434 gttgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttggaatgagat 496  Q
    |||||| | ||| |||||||||||||||||| |||| ||||||||||  |||||| |||||||    
T  30525219 gttgtttagtgtataaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 1460468 - 1460518
Alignment:
Q  447 taaatatgtttgagtactttcat-cctttgagctaatttttggaatgagat 496  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  1460468 taaatatgtttgagtactttcatacgtttgagctagtttttggaatgagat 1460518  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 9928844 - 9928771
Alignment:
Q  415 acattgctgagatttatgggttgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttgg 488  Q
    |||||||| ||||||  |||||||||| ||| |||||||||||||||||  | ||  ||| |||||||||||||    
T  9928844 acattgctcagatttccgggttgttgagtgtataaatatgtttgagtaccctaattttttaagctaatttttgg 9928771  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 30130883 - 30130797
Alignment:
Q  410 gtcctacattgctgagatttatgggttgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttggaatgagat 496  Q
    ||||||||||||| || ||  |||| |||||| ||| |||||||| |||||||  |||||| ||||||||| ||||||| |||||||    
T  30130883 gtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagat 30130797  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 50196900 - 50196960
Alignment:
Q  436 tgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttggaatgagat 496  Q
    |||||| ||| ||||||||||| | |||  |||||||||||||||| |||||| |||||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagat 50196960  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 23972473 - 23972522
Alignment:
Q  447 taaatatgtttgagtactttcatcctttgagctaatttttggaatgagat 496  Q
    |||||||||||||||||  |||||||||||| ||| ||||||||||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagat 23972522  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 8402058 - 8402009
Alignment:
Q  447 taaatatgtttgagtactttcatcctttgagctaatttttggaatgagat 496  Q
    |||||||| ||||||||  || ||||||||||||| ||||||||||||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagat 8402009  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 25685712 - 25685777
Alignment:
Q  415 acattgctgagatttatgggttgttgaatgtctaaatatgtttgagtactttcatcctttgagcta 480  Q
    |||||| | |||||| || |||||||| ||| ||||||||||||| |||| ||||| |||||||||    
T  25685712 acattgttcagatttctgagttgttgagtgtataaatatgtttgaatactctcatcatttgagcta 25685777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 512
Target Start/End: Complemental strand, 35536846 - 35536769
Alignment:
Q  436 tgttgaatgtctaaatatgtttgagtactttcatcctttgagctaatttttggaatgagat-gaagtccatttaacat 512  Q
    |||||||||| ||||||||||  ||||   ||||| |||||| ||| |||||| ||||||| ||||||||||||||||    
T  35536846 tgttgaatgtataaatatgttcaagtatcctcatcatttgagttaacttttgggatgagattgaagtccatttaacat 35536769  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 10645788 - 10645836
Alignment:
Q  432 gggttgttgaatgtctaaatatgtttgagtactttcatcctttgagcta 480  Q
    |||||||||| ||| |||||||||||||||||  |||||||| ||||||    
T  10645788 gggttgttgagtgtataaatatgtttgagtaccctcatccttagagcta 10645836  T

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Target: scaffold1432 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 1012 - 968
Alignment:
Q  433 ggttgttgaatgtctaaatatgtttgagtactttcatcctttgag 477  Q
    ||||||||||||| ||||||||||||||||   ||||||||||||    
T  1012 ggttgttgaatgtataaatatgtttgagtatcctcatcctttgag 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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