View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16622_low_6 (Length: 410)

Name: NF16622_low_6
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16622_low_6
NF16622_low_6
[»] chr5 (10 HSPs)
chr5 (327-410)||(7413152-7413235)
chr5 (327-410)||(37190539-37190622)
chr5 (327-410)||(5075988-5076071)
chr5 (83-135)||(37190754-37190806)
chr5 (83-136)||(5075804-5075857)
chr5 (83-136)||(7413365-7413418)
chr5 (217-256)||(5075878-5075917)
chr5 (217-256)||(37190693-37190732)
chr5 (217-256)||(7413306-7413345)
chr5 (331-388)||(37190512-37190569)
[»] chr3 (3 HSPs)
chr3 (331-410)||(7403943-7404022)
chr3 (362-406)||(7403925-7403969)
chr3 (331-394)||(36086983-36087047)
[»] chr2 (8 HSPs)
chr2 (331-410)||(31331964-31332043)
chr2 (331-403)||(31338693-31338765)
chr2 (360-410)||(30269185-30269235)
chr2 (331-403)||(30269249-30269329)
chr2 (219-256)||(30269404-30269441)
chr2 (362-406)||(30269303-30269347)
chr2 (362-406)||(31331946-31331990)
chr2 (362-406)||(31338675-31338719)
[»] chr8 (2 HSPs)
chr8 (331-410)||(25641138-25641217)
chr8 (351-398)||(4756144-4756191)
[»] chr6 (2 HSPs)
chr6 (331-410)||(30825084-30825163)
chr6 (362-406)||(30825137-30825181)
[»] chr7 (1 HSPs)
chr7 (343-410)||(4682953-4683020)
[»] chr4 (4 HSPs)
chr4 (360-410)||(53302511-53302561)
chr4 (360-406)||(53302572-53302618)
chr4 (219-256)||(8238579-8238616)
chr4 (219-256)||(53302813-53302850)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 7413235 - 7413152
Alignment:
Q  327 gttcgataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7413235 gttcgataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 7413152  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 37190622 - 37190539
Alignment:
Q  327 gttcgataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37190622 gttcgataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcttcaatcaacctttatggtac 37190539  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 5075988 - 5076071
Alignment:
Q  327 gttcgataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  5075988 gttcgataaaatgcttcaactaaactttatgacacagttcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 5076071  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 37190806 - 37190754
Alignment:
Q  83 acatctccattagctatctttgctgaaggtattctcattgttctaatgccttg 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37190806 acatctccattagctatctttgctgaaggtattctcattgttctaatgccttg 37190754  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 5075804 - 5075857
Alignment:
Q  83 acatctccattagctatctttgctgaaggtattctcattgttctaatgccttgc 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5075804 acatctccattagctatctttgctgaaggtattcccattgttctaatgccttgc 5075857  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 7413418 - 7413365
Alignment:
Q  83 acatctccattagctatctttgctgaaggtattctcattgttctaatgccttgc 136  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  7413418 acatctccattagctatctttgttgaaggtatttccattgttctaatgccttgc 7413365  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 5075878 - 5075917
Alignment:
Q  217 ttgtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5075878 ttgtttttcacgttgtaaaaatggttgagatgaagtgtga 5075917  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 37190732 - 37190693
Alignment:
Q  217 ttgtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37190732 ttgtttttcacgttgtaaaaatggttgagatgaagtgtga 37190693  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 7413345 - 7413306
Alignment:
Q  217 ttgtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7413345 ttgtttttcccgttgtaaaaatggttgagatgaagtgtga 7413306  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 388
Target Start/End: Complemental strand, 37190569 - 37190512
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatg 388  Q
    |||||||||||||||  || |||||||  |||||||||| ||| ||||||||||||||    
T  37190569 gataaaatgcttcaatcaacctttatggtacaatgcttgatttttgtttgataaaatg 37190512  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 7403943 - 7404022
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  7403943 gataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtac 7404022  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 7403925 - 7403969
Alignment:
Q  362 aatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    ||||||||||||||||||||||||||||  ||| ||| |||||||    
T  7403925 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 7403969  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 36087047 - 36086983
Alignment:
Q  331 gataaaatgcttcaactaaac-tttatgacacaatgcttgttttgtgtttgataaaatgcctcaa 394  Q
    |||||||||||||||| |||| ||||||  ||||| | |||||| ||||||||||||||| ||||    
T  36087047 gataaaatgcttcaaccaaacttttatggtacaattcatgttttatgtttgataaaatgcttcaa 36086983  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 31331964 - 31332043
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  31331964 gataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtac 31332043  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 31338693 - 31338765
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaaccttt 403  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  31338693 gataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaaccttt 31338765  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 30269235 - 30269185
Alignment:
Q  360 acaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  30269235 acaatgcttgttttctgtttgataaaatgcttcaatctacctttatggtac 30269185  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 30269329 - 30269249
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaa--------tgcttgttttgtgtttgataaaatgcctcaatcaaccttt 403  Q
    ||||||||||| |||| ||||||||||||||||        |||||||||| ||||||||||||||| |||||||| ||||    
T  30269329 gataaaatgctgcaaccaaactttatgacacaatgctacaatgcttgttttctgtttgataaaatgcttcaatcaaacttt 30269249  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 30269441 - 30269404
Alignment:
Q  219 gtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30269441 gtttgtcacgttgaaaaaatggttgagatgaagtgtga 30269404  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 30269347 - 30269303
Alignment:
Q  362 aatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    ||||||||||||||||||||||||||||  ||| ||| |||||||    
T  30269347 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 30269303  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 31331946 - 31331990
Alignment:
Q  362 aatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    ||||||||||||||||||||||||||||  ||| ||| |||||||    
T  31331946 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 31331990  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 31338675 - 31338719
Alignment:
Q  362 aatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    ||||||||||||||||||||||||||||  ||| ||| |||||||    
T  31338675 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 31338719  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 25641217 - 25641138
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||| | |||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  25641217 gataaaatgatgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtac 25641138  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 4756191 - 4756144
Alignment:
Q  351 ctttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaa 398  Q
    |||||||  |||||||||||||| ||||||||||||||| ||||||||    
T  4756191 ctttatggtacaatgcttgttttctgtttgataaaatgcttcaatcaa 4756144  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 30825163 - 30825084
Alignment:
Q  331 gataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    ||||||||||| |||| |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  30825163 gataaaatgctgcaaccaaactttatgactcaatgcttgtattctgtttgataaaatgcttcaatcaacctttatggtac 30825084  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 30825181 - 30825137
Alignment:
Q  362 aatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    ||||||||||||||||||||||||||||  ||| ||| |||||||    
T  30825181 aatgcttgttttgtgtttgataaaatgctgcaaccaaactttatg 30825137  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 4682953 - 4683020
Alignment:
Q  343 caactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  4682953 caaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtac 4683020  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 53302561 - 53302511
Alignment:
Q  360 acaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtac 410  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  53302561 acaatgcttgttttctgtttgataaaatgcttcaatcaacctttatggtac 53302511  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 53302618 - 53302572
Alignment:
Q  360 acaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatg 406  Q
    |||||||||||||| ||||||||||||||| |||||||  |||||||    
T  53302618 acaatgcttgttttctgtttgataaaatgcttcaatcagactttatg 53302572  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 8238616 - 8238579
Alignment:
Q  219 gtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  8238616 gtttgtcacgttgaaaaaatggttgagatgaagtgtga 8238579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 53302850 - 53302813
Alignment:
Q  219 gtttttcacgttgtaaaaatggttgagatgaagtgtga 256  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  53302850 gtttgtcacgttgaaaaaatggttgagatgaagtgtga 53302813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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