View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16622_low_9 (Length: 401)
Name: NF16622_low_9
Description: NF16622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16622_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 109 - 388
Target Start/End: Complemental strand, 29427129 - 29426845
Alignment:
| Q |
109 |
catcttcaatttattataagaaactgttatcccttactccactttcttgtccaactctacaaaatagcaaaatttcaacccaagttaaaggagac--tca |
206 |
Q |
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| T |
29427129 |
catcttcaatttattataagaaactgttatcccttactccactttcttgtccaactctacaaaatagcaaaatttcaaaccaggttaaaggagactttca |
29427030 |
T |
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| Q |
207 |
ttaagtgaaaagactcacatgactatttagaataatggtttttaactagaataattattctaaaaagacggagtcatttttaaaaaactccatc-ttttt |
305 |
Q |
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| T |
29427029 |
ttaagtgataagatccacatgactatttagaataatggtttttaactagaataattattctaaaaagacggagtcatttttaaagaactccatctttttt |
29426930 |
T |
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| Q |
306 |
agaataattattttcttagactttagaataat--agttttgtttgaagagactctatccattcttgtatttcagatcagaattat |
388 |
Q |
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| T |
29426929 |
agaataattattttcttagactttagaataatacagttttgtttggtgagactctatccattcttgtatttcagatcagatttat |
29426845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 29427186 - 29427118
Alignment:
| Q |
18 |
aatattagatccaatatctattttattttatttgtttgtctatttctctttgaataacatcttcaattt |
86 |
Q |
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| T |
29427186 |
aatattagatccaatatctaatttttttattttttttatctatttctctttgaataacatcttcaattt |
29427118 |
T |
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