View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_high_10 (Length: 339)
Name: NF16623_high_10
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 139 - 328
Target Start/End: Complemental strand, 18223329 - 18223140
Alignment:
| Q |
139 |
gtgtttcacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgcacaatttttgtttccatttttggattcaataaatgttca |
238 |
Q |
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| T |
18223329 |
gtgttgcacaaatttggaattttttctttggttcagtgtttgttgttcaacttgattctgcacagtttttgtttccatttttggattcaataaatgttga |
18223230 |
T |
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| Q |
239 |
gacaaatcgactataaacatgatcttacacagtactgtgaaagtgaaagcagattctctgttttgcattaattgaaatttttgttttcat |
328 |
Q |
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| T |
18223229 |
gacaaatcgactataaacatgatcttacacagtactgtgaaagtgaaagcagattctctgttttgcattaattgaaatttttgttttcat |
18223140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 18223448 - 18223388
Alignment:
| Q |
14 |
aatctaacttcgttaagctcaattcaagtgagtgtcaagttttcagtaagatctggttttg |
74 |
Q |
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| T |
18223448 |
aatctaacttcgttaagctcaattcaagtgagtgtcaagttttcactaagatctggttttg |
18223388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 23735578 - 23735495
Alignment:
| Q |
145 |
cacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgcacaatttttgtttccatttttggattcaa |
228 |
Q |
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| T |
23735578 |
cacaaatgtggaattatttatttgattccgtgtttgttcttgaacttgattctgctcaatttttgtttccatttttggattcaa |
23735495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 43015833 - 43015769
Alignment:
| Q |
145 |
cacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgcacaatttttg |
209 |
Q |
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| T |
43015833 |
cacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccatttttg |
43015769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 43016021 - 43015967
Alignment:
| Q |
145 |
cacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgc |
199 |
Q |
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| T |
43016021 |
cacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgc |
43015967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 43015931 - 43015890
Alignment:
| Q |
158 |
ttatttctttggttcagtgtttgttgttcaacttgattctgc |
199 |
Q |
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| T |
43015931 |
ttatttctttggttcagtgtttgttcttgaacttgattctgc |
43015890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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