View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_high_12 (Length: 321)
Name: NF16623_high_12
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 153 - 315
Target Start/End: Complemental strand, 43764774 - 43764612
Alignment:
| Q |
153 |
ccccactagcagccacctcctcattaatcccatctagctgattgtcgttttcaatgtcagactcagcatagtcccccaaacaagcatcctcccctaaagc |
252 |
Q |
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| T |
43764774 |
ccccactagcagccacctcctcattaatcccatctagatgatcgttgttttcaatgtcagactcagcatagtcccccaaacaagcatcctcccctaaagc |
43764675 |
T |
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| Q |
253 |
aaagccccactcctcgacaattgtaaaaccaagaagttcaccatccaccaacacctttgcttc |
315 |
Q |
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| T |
43764674 |
aaagccccacttctcgacaattgtaaaatcaagaagttcaccatccaccaacaccttagcttc |
43764612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 43769646 - 43769513
Alignment:
| Q |
18 |
agcatgtgcttgcgcaacaagagatactgactgcaacgtttcctctgtatgtaacttagaattctggtggacatcaacactattatccttatgctgccat |
117 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
43769646 |
agcatgtgcttgtgcaacaagagatactgactgcagcgtttcctctgtatgtaactcagaattctggcggacatcaacactattatccttctgcttccat |
43769547 |
T |
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| Q |
118 |
tgttcggatagatggttcaaaagaacatccactt |
151 |
Q |
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| T |
43769546 |
tgttcggatagatggttcaaaagaacatccactt |
43769513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 13153371 - 13153289
Alignment:
| Q |
228 |
ccaaacaagcatcctcccctaaagcaaagccccactcctcgacaattgtaaaaccaagaagttcaccatccaccaacacctttgc |
312 |
Q |
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| T |
13153371 |
ccaaacaagcatcctcccctaaag--aaccccccctcctcaacaattttaaagtcaagaagttctccatccaccaaaacctttgc |
13153289 |
T |
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