View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_high_13 (Length: 315)
Name: NF16623_high_13
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 32424881 - 32424577
Alignment:
| Q |
11 |
cataggagaaaaaacagcagcagctaacaataattcagctagagggttcaacgtgattgatgacatcaaagccaatgtggaaaaagcatgcccaggggtt |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424881 |
cataggagaaaaaacagcagctgctaacaataattcagctagaggattcaacgtgattgatgacatcaaagccaatgtggaaaaagcatgcccaggggtt |
32424782 |
T |
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| Q |
111 |
gtgtcctgtgctgatattcttaccctggctgcccgagactctgttgttcatgtgagttatgttgttttgacataaatttgacatcaaaattcaaaaacaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424781 |
gtgtcctgtgctgatattcttaccctggctgcccgggactctgttgttcatgtgagttatgttgttttgacataaatttgacatcaaaattcaaaaacaa |
32424682 |
T |
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| Q |
211 |
tttagatggttaatcaaatttagtatatagttcataaatataacaaaaactgtcacaactcattgattctccataaaacacaataaacatgtcattcacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424681 |
tttagatggttaatcaaatttagtatatagttcataaatataacaaaaactgtcacaactcattgattctccataaaacacaataaacatgtcattcacc |
32424582 |
T |
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| Q |
311 |
ataac |
315 |
Q |
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||||| |
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| T |
32424581 |
ataac |
32424577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 32450928 - 32450766
Alignment:
| Q |
11 |
cataggagaaaaaacagcagcagctaacaataattcagctagagggttcaacgtgattgatgacatcaaagccaatgtggaaaaagcatgcccaggggtt |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
32450928 |
cataggagagaaaacagcagcagctaacaataattcagctagaggattcaacgtgattgatgacatcaaagccagtgtggagaaagcatgccccaaggtt |
32450829 |
T |
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| Q |
111 |
gtgtcctgtgctgatattcttaccctggctgcccgagactctgttgttcatgtgagttatgtt |
173 |
Q |
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| T |
32450828 |
gtgtcctgtgctgatattcttgctctggctgctcgagactcagttgttcatgtaagttatgtt |
32450766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 42678563 - 42678502
Alignment:
| Q |
163 |
tgagttatgttgttttgacataaatttgacatcaaaattcaaaaacaatttagatggttaat |
224 |
Q |
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| T |
42678563 |
tgagttatgttattttgacacaattttgacatcaaatttcaaaaacaaatcagatagttaat |
42678502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 6986829 - 6986780
Alignment:
| Q |
175 |
ttttgacataaatttgacatcaaaattcaaaaacaatttagatggttaat |
224 |
Q |
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|||||||||||||| |||| |||| ||| |||| |||||||||||||||| |
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| T |
6986829 |
ttttgacataaattagacaacaaatttcgaaaataatttagatggttaat |
6986780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 35226381 - 35226332
Alignment:
| Q |
204 |
aaaacaatttagatggttaatcaaatttagtatatagttcataaatataa |
253 |
Q |
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| T |
35226381 |
aaaacaatttagatggttaatcaagttcagttgatagttaataaatataa |
35226332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 12117202 - 12117162
Alignment:
| Q |
184 |
aaatttgacatcaaaattcaaaaacaatttagatggttaat |
224 |
Q |
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| T |
12117202 |
aaatttgacatcaaacttcaacaacaatttatatggttaat |
12117162 |
T |
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