View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_high_2 (Length: 564)
Name: NF16623_high_2
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 29196008 - 29195461
Alignment:
| Q |
1 |
aagcgccatctgcgttgggcacctccacctaggtattggaagatagatgtatttgcattgttgctcttatgctttgaatatagtagtagagatggtacat |
100 |
Q |
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| T |
29196008 |
aagcgccatctgcgttgggcacctccacctaggtattggaagatagatatatttgcattgaagctcttatgctttgaatatagtagtagagatggtacat |
29195909 |
T |
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| Q |
101 |
ttacatttaatagtatcagggctcccaagttatcaaagttttactggaatgatttaccaatgcgacctgatacattattaggcattcagnnnnnnnnn-c |
199 |
Q |
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| T |
29195908 |
ttacatttaatagtatcagggctcccaagttatcaaagttttactggaatgatttaccaatgcgacctgatacattattaggcattcagaaaaaaaaaac |
29195809 |
T |
|
| Q |
200 |
taatgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttctaa |
299 |
Q |
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| T |
29195808 |
taatgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttctaa |
29195709 |
T |
|
| Q |
300 |
atgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgacttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29195708 |
atgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgacttt |
29195609 |
T |
|
| Q |
400 |
tacagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctattaaagctcctcaattat |
499 |
Q |
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| T |
29195608 |
tacagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctattaaagctcctcaattat |
29195509 |
T |
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| Q |
500 |
tgaatcttttttggaacgtaactaggaatgaagaaatcccacatgcct |
547 |
Q |
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| T |
29195508 |
tgaatcttttttggaacgtaactaggaatgaagaaatcccacatgcct |
29195461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 199 - 483
Target Start/End: Original strand, 29204609 - 29204884
Alignment:
| Q |
199 |
ctaatgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttcta |
298 |
Q |
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|||||||| |||||||||||||||||||| ||| |||||||||||||||||| | |||| ||||| |||||| || | ||||||||||||||||||| |
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| T |
29204609 |
ctaatgccgcctgatgtgttttgtggaatgggaaaattgacaaaaattgtgttgtgtaaagtccttgtaccaaaatatgtcctgcctagtttgttttcta |
29204708 |
T |
|
| Q |
299 |
aatgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgactt |
398 |
Q |
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| T |
29204709 |
attgtcaccaacttgagga------------gggatgcacattcgagttttccatccatattatcagtccaacattgcgtcggttgagcataattgactt |
29204796 |
T |
|
| Q |
399 |
ttacagtgtttcttggaactta---gacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctatt |
483 |
Q |
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| ||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||| |||| |
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| T |
29204797 |
tgacaatgttccttggaacttagacgacattgatgcattgaatataacttccttagactatagaggtcaaatgaggatatgttgtatt |
29204884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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