View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16623_high_22 (Length: 213)

Name: NF16623_high_22
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16623_high_22
NF16623_high_22
[»] chr4 (26 HSPs)
chr4 (151-198)||(54721054-54721101)
chr4 (116-151)||(4812600-4812635)
chr4 (116-151)||(13910875-13910910)
chr4 (116-151)||(24670749-24670784)
chr4 (116-150)||(34853190-34853224)
chr4 (116-152)||(35370151-35370187)
chr4 (120-155)||(18165234-18165269)
chr4 (116-151)||(31110251-31110286)
chr4 (116-150)||(24670488-24670522)
chr4 (116-154)||(26144154-26144191)
chr4 (116-150)||(34853378-34853412)
chr4 (116-154)||(46360917-46360954)
chr4 (116-154)||(49166641-49166679)
chr4 (116-152)||(15522695-15522732)
chr4 (116-153)||(36405877-36405913)
chr4 (116-152)||(50084820-50084857)
chr4 (116-152)||(1952733-1952768)
chr4 (116-152)||(4928821-4928857)
chr4 (116-152)||(13910621-13910657)
chr4 (116-152)||(20514653-20514689)
chr4 (116-152)||(35370412-35370447)
chr4 (119-151)||(42802588-42802620)
chr4 (116-152)||(47858453-47858488)
chr4 (116-152)||(49166986-49167022)
chr4 (116-152)||(51727111-51727147)
chr4 (116-152)||(54097098-54097133)
[»] chr2 (24 HSPs)
chr2 (114-154)||(2941360-2941400)
chr2 (116-152)||(493725-493761)
chr2 (116-152)||(13691742-13691778)
chr2 (116-151)||(31108345-31108380)
chr2 (116-154)||(40307653-40307691)
chr2 (116-150)||(44612513-44612547)
chr2 (116-155)||(9468425-9468464)
chr2 (116-151)||(22552707-22552742)
chr2 (116-147)||(35635054-35635085)
chr2 (116-147)||(35635739-35635770)
chr2 (116-154)||(20298702-20298740)
chr2 (117-155)||(21903918-21903956)
chr2 (116-150)||(28739640-28739674)
chr2 (116-146)||(35337159-35337189)
chr2 (122-152)||(35619595-35619625)
chr2 (122-152)||(35627600-35627630)
chr2 (119-152)||(34545687-34545720)
chr2 (116-148)||(493982-494014)
chr2 (116-152)||(7327766-7327801)
chr2 (116-152)||(25103729-25103765)
chr2 (116-152)||(28739406-28739441)
chr2 (116-152)||(32845455-32845490)
chr2 (116-152)||(35568735-35568771)
chr2 (116-148)||(40385497-40385529)
[»] chr1 (20 HSPs)
chr1 (116-155)||(12277477-12277516)
chr1 (116-154)||(15961765-15961803)
chr1 (116-153)||(50721950-50721987)
chr1 (116-152)||(24730227-24730263)
chr1 (116-152)||(35384223-35384259)
chr1 (116-151)||(15961583-15961618)
chr1 (116-151)||(24730055-24730090)
chr1 (116-151)||(13738646-13738681)
chr1 (116-147)||(15879992-15880023)
chr1 (116-151)||(46208198-46208233)
chr1 (116-162)||(14910098-14910144)
chr1 (117-151)||(23889782-23889816)
chr1 (116-150)||(43412822-43412856)
chr1 (116-150)||(50879822-50879856)
chr1 (116-152)||(26486793-26486828)
chr1 (116-148)||(29075330-29075362)
chr1 (116-152)||(37356291-37356327)
chr1 (119-151)||(40091469-40091501)
chr1 (116-152)||(43413084-43413120)
chr1 (116-152)||(52413119-52413154)
[»] chr8 (20 HSPs)
chr8 (116-154)||(11424360-11424398)
chr8 (116-152)||(37611505-37611541)
chr8 (116-151)||(5160523-5160558)
chr8 (116-151)||(11105973-11106008)
chr8 (116-151)||(31343363-31343398)
chr8 (120-152)||(37611264-37611296)
chr8 (116-151)||(11424111-11424146)
chr8 (116-151)||(18367284-18367319)
chr8 (116-155)||(21692629-21692667)
chr8 (116-150)||(5160292-5160326)
chr8 (116-150)||(5566482-5566516)
chr8 (116-150)||(11105770-11105804)
chr8 (116-150)||(12478915-12478949)
chr8 (116-154)||(41708824-41708861)
chr8 (116-153)||(12478570-12478607)
chr8 (119-152)||(13572885-13572918)
chr8 (116-152)||(4352311-4352347)
chr8 (118-150)||(9855985-9856017)
chr8 (116-152)||(11830517-11830553)
chr8 (116-152)||(43383014-43383049)
[»] scaffold0009 (2 HSPs)
scaffold0009 (116-152)||(149984-150020)
scaffold0009 (116-151)||(150249-150284)
[»] chr7 (31 HSPs)
chr7 (116-152)||(24204966-24205002)
chr7 (116-152)||(24374265-24374301)
chr7 (116-152)||(28157021-28157057)
chr7 (116-151)||(19336306-19336341)
chr7 (116-150)||(10659984-10660018)
chr7 (116-150)||(22335542-22335576)
chr7 (116-153)||(29018059-29018096)
chr7 (116-152)||(1492990-1493026)
chr7 (116-152)||(12670632-12670668)
chr7 (116-152)||(30335178-30335214)
chr7 (116-147)||(4675929-4675960)
chr7 (116-151)||(15108348-15108383)
chr7 (116-151)||(24374525-24374560)
chr7 (116-151)||(27881132-27881167)
chr7 (116-147)||(44412300-44412331)
chr7 (116-151)||(48847935-48847970)
chr7 (116-150)||(2248656-2248690)
chr7 (116-150)||(8603767-8603801)
chr7 (123-153)||(22335309-22335339)
chr7 (116-150)||(24205227-24205261)
chr7 (116-150)||(24206745-24206779)
chr7 (116-153)||(3402144-3402181)
chr7 (116-153)||(44412556-44412592)
chr7 (116-152)||(3548761-3548797)
chr7 (116-160)||(13263859-13263903)
chr7 (116-151)||(13638270-13638306)
chr7 (116-152)||(14187935-14187971)
chr7 (116-152)||(18655374-18655409)
chr7 (116-152)||(28000142-28000177)
chr7 (116-152)||(31417526-31417561)
chr7 (116-152)||(45633722-45633758)
[»] chr6 (21 HSPs)
chr6 (116-168)||(21604378-21604430)
chr6 (116-151)||(10366400-10366435)
chr6 (116-150)||(2270829-2270863)
chr6 (116-152)||(1310095-1310131)
chr6 (116-152)||(26882394-26882430)
chr6 (119-154)||(308318-308353)
chr6 (116-151)||(21226982-21227017)
chr6 (116-151)||(21544472-21544507)
chr6 (116-155)||(25562149-25562187)
chr6 (116-155)||(26101663-26101701)
chr6 (116-154)||(31733309-31733348)
chr6 (116-151)||(31826430-31826465)
chr6 (116-158)||(7017062-7017103)
chr6 (116-150)||(18172475-18172509)
chr6 (116-154)||(21544126-21544164)
chr6 (116-150)||(24602667-24602701)
chr6 (116-152)||(308582-308619)
chr6 (118-151)||(13729278-13729311)
chr6 (116-153)||(33225439-33225475)
chr6 (116-155)||(21226721-21226758)
chr6 (116-152)||(31826213-31826248)
[»] scaffold1797 (2 HSPs)
scaffold1797 (116-155)||(467-506)
scaffold1797 (116-151)||(702-737)
[»] scaffold0013 (1 HSPs)
scaffold0013 (116-155)||(149643-149682)
[»] chr3 (31 HSPs)
chr3 (116-151)||(3841327-3841362)
chr3 (116-151)||(15096523-15096558)
chr3 (116-151)||(25924040-25924075)
chr3 (116-155)||(39846370-39846409)
chr3 (116-151)||(41747305-41747340)
chr3 (116-155)||(41747466-41747505)
chr3 (116-154)||(15290011-15290049)
chr3 (116-150)||(16308105-16308139)
chr3 (116-150)||(44512509-44512543)
chr3 (116-153)||(24286149-24286186)
chr3 (116-149)||(33887072-33887105)
chr3 (116-153)||(46551027-46551064)
chr3 (116-152)||(26770262-26770298)
chr3 (116-152)||(29013404-29013440)
chr3 (116-151)||(7226067-7226102)
chr3 (119-154)||(9650132-9650167)
chr3 (116-151)||(15096729-15096764)
chr3 (116-155)||(35434096-35434134)
chr3 (116-161)||(18945788-18945833)
chr3 (116-152)||(19757123-19757160)
chr3 (116-149)||(23526731-23526764)
chr3 (118-151)||(24286412-24286445)
chr3 (118-151)||(48489266-48489299)
chr3 (118-151)||(49166796-49166829)
chr3 (116-153)||(54012612-54012648)
chr3 (116-152)||(13003920-13003956)
chr3 (116-160)||(13041705-13041749)
chr3 (116-160)||(13049782-13049826)
chr3 (116-152)||(17261023-17261058)
chr3 (123-151)||(49167004-49167032)
chr3 (116-152)||(55090267-55090302)
[»] scaffold0148 (1 HSPs)
scaffold0148 (116-154)||(35005-35043)
[»] scaffold0085 (1 HSPs)
scaffold0085 (116-154)||(25024-25062)
[»] scaffold0034 (1 HSPs)
scaffold0034 (116-150)||(83621-83655)
[»] scaffold0025 (1 HSPs)
scaffold0025 (116-150)||(2756-2790)
[»] chr5 (16 HSPs)
chr5 (116-154)||(12496530-12496568)
chr5 (116-152)||(31261002-31261038)
chr5 (116-151)||(9673153-9673188)
chr5 (116-151)||(10331910-10331945)
chr5 (116-151)||(18811385-18811420)
chr5 (116-151)||(27433748-27433783)
chr5 (121-151)||(2044791-2044821)
chr5 (116-154)||(7899717-7899755)
chr5 (116-150)||(12014741-12014775)
chr5 (118-152)||(24197529-24197563)
chr5 (116-150)||(28277276-28277310)
chr5 (116-150)||(28277485-28277519)
chr5 (116-153)||(2724481-2724517)
chr5 (116-152)||(18811124-18811160)
chr5 (116-152)||(28551427-28551463)
chr5 (116-148)||(28593351-28593383)
[»] scaffold0192 (2 HSPs)
scaffold0192 (116-148)||(14210-14242)
scaffold0192 (116-153)||(14471-14507)
[»] scaffold0010 (2 HSPs)
scaffold0010 (116-152)||(145326-145362)
scaffold0010 (116-152)||(145572-145608)
[»] scaffold0716 (1 HSPs)
scaffold0716 (116-147)||(407-438)
[»] scaffold0022 (1 HSPs)
scaffold0022 (116-151)||(63030-63065)
[»] scaffold0171 (1 HSPs)
scaffold0171 (118-152)||(26151-26185)
[»] scaffold0221 (1 HSPs)
scaffold0221 (119-160)||(18303-18344)
[»] scaffold0430 (1 HSPs)
scaffold0430 (116-152)||(12482-12518)


Alignment Details
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 54721054 - 54721101
Alignment:
Q  151 ttaatgaaatgatcaaaacgacttatcttttggaacggaggaagtaat 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  54721054 ttaatgaaatgatcaaaacgacttatcttttggaactgaggaagtaat 54721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 4812600 - 4812635
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  4812600 acctatattacaggggggtaaagcaccattaaccct 4812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 13910875 - 13910910
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  13910875 acctatattacaggggggtaaagcaccattaaccct 13910910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 24670749 - 24670784
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  24670749 acctatattacaggggggtaaagcaccattaaccct 24670784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 34853224 - 34853190
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  34853224 acctatattacaggggggtaaagcaccattaaccc 34853190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 35370187 - 35370151
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||| ||||||||||||||||||||||||||    
T  35370187 acctatattataggggggtaaagcaccattaaccctt 35370151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 18165234 - 18165269
Alignment:
Q  120 atattacaggggggtaaagcaccattaacccttaat 155  Q
    |||||||||||||||||||||| |||||||||||||    
T  18165234 atattacaggggggtaaagcactattaacccttaat 18165269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 31110286 - 31110251
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  31110286 acctatattacaggggggtaaaacaccattaaccct 31110251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 24670522 - 24670488
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||| ||||||||||||||||||    
T  24670522 acctatattacaggggtgtaaagcaccattaaccc 24670488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 26144191 - 26144154
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  26144191 acctatattacaggggg-taaagcaccattaacccttaa 26144154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 34853378 - 34853412
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||| ||||||||||||||||||||||    
T  34853378 acctatattacaagggggtaaagcaccattaaccc 34853412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 46360917 - 46360954
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  46360917 acctatattacagggg-gtaaagcaccattaacccttaa 46360954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 49166679 - 49166641
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  49166679 acctatattacaggggggtaaaacactattaacccttaa 49166641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 15522732 - 15522695
Alignment:
Q  116 acctatattacagggggg-taaagcaccattaaccctt 152  Q
    |||||||||||||||||| |||||||||||||||||||    
T  15522732 acctatattacagggggggtaaagcaccattaaccctt 15522695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 36405877 - 36405913
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36405877 acctatattacagggg-gtaaagcaccattaaccctta 36405913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 50084857 - 50084820
Alignment:
Q  116 acctatattacagg-ggggtaaagcaccattaaccctt 152  Q
    |||||||||||||| |||||||||||||||||||||||    
T  50084857 acctatattacaggaggggtaaagcaccattaaccctt 50084820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 1952768 - 1952733
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1952768 acctatattacaggggg-taaagcaccattaaccctt 1952733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 4928857 - 4928821
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| || |||||||||||    
T  4928857 acctatattacaggggggtaaaacatcattaaccctt 4928821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 13910657 - 13910621
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  13910657 acctatattacaagggggtaaaacaccattaaccctt 13910621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 20514689 - 20514653
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  20514689 acctatattacagaggggtaaaacaccattaaccctt 20514653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 35370412 - 35370447
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35370412 acctatattacagggg-gtaaagcaccattaaccctt 35370447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 42802588 - 42802620
Alignment:
Q  119 tatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||| |||||||||||||    
T  42802588 tatattacaggggggtaaaacaccattaaccct 42802620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 47858453 - 47858488
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47858453 acctatattacagggg-gtaaagcaccattaaccctt 47858488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 49166986 - 49167022
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  49166986 acctatattacaggggggtaaaacactattaaccctt 49167022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 51727147 - 51727111
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  51727147 acctatattacaggggggtaaggcactattaaccctt 51727111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 54097133 - 54097098
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  54097133 acctatattacaggggg-taaagcaccattaaccctt 54097098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 2941400 - 2941360
Alignment:
Q  114 ttacctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2941400 ttacctatattacaggggggtaaagcaccattaacccttaa 2941360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 493761 - 493725
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  493761 acctatattacaggggggtaaagcaccattaaccctt 493725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 13691778 - 13691742
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  13691778 acctatattacaggggggtaaagcaccattaaccctt 13691742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 31108380 - 31108345
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  31108380 acctatattacaggggggtaaagcaccattaaccct 31108345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 40307691 - 40307653
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  40307691 acctatattacaggggggtaaaacaccattaacccttaa 40307653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 44612513 - 44612547
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  44612513 acctatattacaggggggtaaagcaccattaaccc 44612547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 9468464 - 9468425
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  9468464 acctatattataggggggtaaagcaccattatcccttaat 9468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 22552707 - 22552742
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  22552707 acctatattacaggggggtaaaacaccattaaccct 22552742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 35635085 - 35635054
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  35635085 acctatattacaggggggtaaagcaccattaa 35635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 35635770 - 35635739
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  35635770 acctatattacaggggggtaaagcaccattaa 35635739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 20298740 - 20298702
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  20298740 acctatattacaggggggtaaaacaccattaacctttaa 20298702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 21903956 - 21903918
Alignment:
Q  117 cctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  21903956 cctatattacaggggtgtaaagccccattaacccttaat 21903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28739640 - 28739674
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||| ||||||||||||||||||    
T  28739640 acctatattacaggggtgtaaagcaccattaaccc 28739674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 35337159 - 35337189
Alignment:
Q  116 acctatattacaggggggtaaagcaccatta 146  Q
    |||||||||||||||||||||||||||||||    
T  35337159 acctatattacaggggggtaaagcaccatta 35337189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 35619625 - 35619595
Alignment:
Q  122 attacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||    
T  35619625 attacaggggggtaaagcaccattaaccctt 35619595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 35627630 - 35627600
Alignment:
Q  122 attacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||    
T  35627630 attacaggggggtaaagcaccattaaccctt 35627600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 34545720 - 34545687
Alignment:
Q  119 tatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||| |||||||||||||||||||||||    
T  34545720 tatattacagaggggtaaagcaccattaaccctt 34545687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 493982 - 494014
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaac 148  Q
    |||||||||||||||||||||| ||||||||||    
T  493982 acctatattacaggggggtaaaacaccattaac 494014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 7327801 - 7327766
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7327801 acctatattacaggggg-taaagcaccattaaccctt 7327766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 25103765 - 25103729
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  25103765 acctatattacagggggataaagcactattaaccctt 25103729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 28739441 - 28739406
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28739441 acctatattacaggggg-taaagcaccattaaccctt 28739406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 32845490 - 32845455
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  32845490 acctatattacaggggg-taaagcaccattaaccctt 32845455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 35568735 - 35568771
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  35568735 acctatattacatgggggtaaaacaccattaaccctt 35568771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 40385497 - 40385529
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaac 148  Q
    |||||||||| ||||||||||||||||||||||    
T  40385497 acctatattataggggggtaaagcaccattaac 40385529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 12277477 - 12277516
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12277477 acctatattacaggggggtaaagcaccattaacccttaat 12277516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 15961765 - 15961803
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15961765 acctatattacaggggggtaaagcaccattaacccttaa 15961803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 50721950 - 50721987
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50721950 acctatattacaggggggtaaagcaccattaaccctta 50721987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 24730227 - 24730263
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  24730227 acctatattacaggggggtaaagcaccattaaccctt 24730263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 35384259 - 35384223
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  35384259 acctatattacaggggggtaaagcaccattaaccctt 35384223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 15961618 - 15961583
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  15961618 acctatattacaggggggtaaagcaccattaaccct 15961583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 24730090 - 24730055
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  24730090 acctatattacaggggggtaaagcaccattaaccct 24730055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 13738646 - 13738681
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||| ||||||||    
T  13738646 acctatattacaggggggtaaagcacctttaaccct 13738681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 15879992 - 15880023
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  15879992 acctatattacaggggggtaaagcaccattaa 15880023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 46208233 - 46208198
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||| ||||||||||||||||||||    
T  46208233 acctatattacagggaggtaaagcaccattaaccct 46208198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 14910098 - 14910144
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaatga 162  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  14910098 acctatattacaggggagtaaaacactattaacccttaataaaatga 14910144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 23889782 - 23889816
Alignment:
Q  117 cctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||| |||||||||||||||||||||    
T  23889782 cctatattacaggagggtaaagcaccattaaccct 23889816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 43412856 - 43412822
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  43412856 acctatattacaggggggtaaaacaccattaaccc 43412822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 50879856 - 50879822
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    ||||||||||||| |||||||||||||||||||||    
T  50879856 acctatattacagaggggtaaagcaccattaaccc 50879822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 26486793 - 26486828
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  26486793 acctatattacagggg-gtaaagcaccattaaccctt 26486828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 29075362 - 29075330
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaac 148  Q
    |||||||||||||||||||||| ||||||||||    
T  29075362 acctatattacaggggggtaaaacaccattaac 29075330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 37356291 - 37356327
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| | ||||||||||||||||||||||    
T  37356291 acctatattacaagagggtaaagcaccattaaccctt 37356327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 40091501 - 40091469
Alignment:
Q  119 tatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||| |||||||||    
T  40091501 tatattacaggggggtaaagcactattaaccct 40091469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 43413084 - 43413120
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  43413084 acctatattacaggagggtaaaacaccattaaccctt 43413120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 52413154 - 52413119
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  52413154 acctatattacaggggg-taaagcaccattaaccctt 52413119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 11424360 - 11424398
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11424360 acctatattacaggggggtaaagcaccattaacccttaa 11424398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 37611505 - 37611541
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  37611505 acctatattacaggggggtaaagcaccattaaccctt 37611541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 5160523 - 5160558
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  5160523 acctatattacaggggggtaaagcaccattaaccct 5160558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 11105973 - 11106008
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  11105973 acctatattacaggggggtaaagcaccattaaccct 11106008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 31343398 - 31343363
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  31343398 acctatattacaggggggtaaagcaccattaaccct 31343363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 37611296 - 37611264
Alignment:
Q  120 atattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||    
T  37611296 atattacaggggggtaaagcaccattaaccctt 37611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 11424146 - 11424111
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||| |||||||||||||||||||||||    
T  11424146 acctatattacaagggggtaaagcaccattaaccct 11424111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 18367284 - 18367319
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18367284 acctatattacaggggggtaaagcacctttaaccct 18367319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 21692629 - 21692667
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  21692629 acctatattacagggg-gtaaagcaccattaacccttaat 21692667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 5160326 - 5160292
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  5160326 acctatattacaggggggtaaaacaccattaaccc 5160292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 5566516 - 5566482
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||| ||||||||    
T  5566516 acctatattacaggggggtaaagcactattaaccc 5566482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 11105804 - 11105770
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    ||||||||||||||||| |||||||||||||||||    
T  11105804 acctatattacagggggataaagcaccattaaccc 11105770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 12478915 - 12478949
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||| ||||||||    
T  12478915 acctatattacaggggggtaaagcactattaaccc 12478949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 41708861 - 41708824
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  41708861 acctatattacaggggg-taaagcaccattaacccttaa 41708824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 12478607 - 12478570
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  12478607 acctatattacaggggggtaaaacactattaaccctta 12478570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 13572885 - 13572918
Alignment:
Q  119 tatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||||||||| ||||||||||    
T  13572885 tatattacaggggggtaaagcactattaaccctt 13572918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 4352347 - 4352311
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4352347 acctatattacagggggataaagtaccattaaccctt 4352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 9856017 - 9855985
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccc 150  Q
    ||||||||||||| |||||||||||||||||||    
T  9856017 ctatattacagggaggtaaagcaccattaaccc 9855985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 11830517 - 11830553
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  11830517 acctatattacaggggggtaaaacactattaaccctt 11830553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 43383014 - 43383049
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43383014 acctatattacagggg-gtaaagcaccattaaccctt 43383049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 150020 - 149984
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  150020 acctatattacaggggggtaaagcaccattaaccctt 149984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 150249 - 150284
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||| |||||||||||||||||||    
T  150249 acctatattacaggggtgtaaagcaccattaaccct 150284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 24205002 - 24204966
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  24205002 acctatattacaggggggtaaagcaccattaaccctt 24204966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 24374301 - 24374265
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  24374301 acctatattacaggggggtaaagcaccattaaccctt 24374265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 28157057 - 28157021
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  28157057 acctatattacaggggggtaaagcaccattaaccctt 28157021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 19336306 - 19336341
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  19336306 acctatattacaggggggtaaagcaccattaaccct 19336341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 10659984 - 10660018
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  10659984 acctatattacaggggggtaaagcaccattaaccc 10660018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 22335542 - 22335576
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  22335542 acctatattacaggggggtaaagcaccattaaccc 22335576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 29018059 - 29018096
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29018059 acctatattacaggggggtaaaacaccattaaccctta 29018096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 1492990 - 1493026
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| ||||||||||||||||||||||||    
T  1492990 acctatattacaagggggtaaagcaccattaaccctt 1493026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 12670668 - 12670632
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12670668 acctataatacaggggggtaaagcaccattaaccctt 12670632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 30335214 - 30335178
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30335214 acctatattacaggggggtaaaacaccattaaccctt 30335178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 4675960 - 4675929
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  4675960 acctatattacaggggggtaaagcaccattaa 4675929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 15108348 - 15108383
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  15108348 acctatattacaggagggtaaagcaccattaaccct 15108383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 24374525 - 24374560
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24374525 acctatattacagggggataaagcaccattaaccct 24374560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 27881132 - 27881167
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  27881132 acctatattacaggggggtaaaacaccattaaccct 27881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 44412331 - 44412300
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  44412331 acctatattacaggggggtaaagcaccattaa 44412300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 48847970 - 48847935
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  48847970 acctatattacaggggggtaaaacaccattaaccct 48847935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 2248656 - 2248690
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  2248656 acctatattacaggagggtaaagcaccattaaccc 2248690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 8603767 - 8603801
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    ||||||||||||||||||||||||| |||||||||    
T  8603767 acctatattacaggggggtaaagcatcattaaccc 8603801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 22335339 - 22335309
Alignment:
Q  123 ttacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||||||||||||||||||    
T  22335339 ttacaggggggtaaagcaccattaaccctta 22335309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 24205227 - 24205261
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  24205227 acctatattacaggggggtaaaacaccattaaccc 24205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 24206745 - 24206779
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  24206745 acctatattacaggggggtaaaacaccattaaccc 24206779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 3402144 - 3402181
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  3402144 acctatattacagaggggtaaagcactattaaccctta 3402181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 44412556 - 44412592
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||| |||||||||||||||||||||    
T  44412556 acctatattacagggg-gtaaagcaccattaaccctta 44412592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 3548797 - 3548761
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| || |||||||||||||||||||||    
T  3548797 acctatattacatggtggtaaagcaccattaaccctt 3548761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 13263903 - 13263859
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaat 160  Q
    |||||||||||||||||||||| ||| ||||||||| ||| ||||    
T  13263903 acctatattacaggggggtaaaacactattaaccctaaataaaat 13263859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 13638270 - 13638306
Alignment:
Q  116 acctatattacagggg-ggtaaagcaccattaaccct 151  Q
    |||||||||||||||| ||||||||||||||||||||    
T  13638270 acctatattacagggggggtaaagcaccattaaccct 13638306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 14187935 - 14187971
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  14187935 acctatattacaggggggtaaaacactattaaccctt 14187971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 18655409 - 18655374
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  18655409 acctatattacaggggg-taaagcaccattaaccctt 18655374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 28000142 - 28000177
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28000142 acctatattacagggg-gtaaagcaccattaaccctt 28000177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 31417526 - 31417561
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31417526 acctatattacagggg-gtaaagcaccattaaccctt 31417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 45633722 - 45633758
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| |||| |||||||||||||||||||    
T  45633722 acctatattacatggggataaagcaccattaaccctt 45633758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 21604378 - 21604430
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaatgatcaaaa 168  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  21604378 acctatattacaggggggtaaagcaccattaaccctaaattatatgatgaaaa 21604430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 10366435 - 10366400
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  10366435 acctatattacaggggggtaaagcaccattaaccct 10366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 2270829 - 2270863
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  2270829 acctatattacaggggggtaaagcaccattaaccc 2270863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 1310095 - 1310131
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1310095 acctatattacaggggagtaaagcaccattaaccctt 1310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 26882394 - 26882430
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26882394 acctatattacaggggggtaaagcactattaaccctt 26882430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 308353 - 308318
Alignment:
Q  119 tatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||| |||||||||||||||||||||    
T  308353 tatattacagggggctaaagcaccattaacccttaa 308318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 21226982 - 21227017
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  21226982 acctatattacaggggggtaaaacaccattaaccct 21227017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 21544472 - 21544507
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||| |||||||||    
T  21544472 acctatattacaggggggtaaagcactattaaccct 21544507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 25562187 - 25562149
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  25562187 acctatattacaggggg-taaagcaccattaacccttaat 25562149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 26101701 - 26101663
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  26101701 acctatattacaggggg-taaagcaccattaacccttaat 26101663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 31733309 - 31733348
Alignment:
Q  116 acctatattaca-ggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  31733309 acctatattacaaggggggtaaagcaccattaacccttaa 31733348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 31826430 - 31826465
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  31826430 acctatattacaggggggtaaaacaccattaaccct 31826465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 7017103 - 7017062
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaa 158  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  7017103 acctatattacaggggg-taaagcaccattaacccttattgaa 7017062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 18172509 - 18172475
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    ||||||||||||||| |||||||||||||||||||    
T  18172509 acctatattacagggtggtaaagcaccattaaccc 18172475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 21544164 - 21544126
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  21544164 acctatattacaggggggtaaaacactattaacccttaa 21544126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 24602667 - 24602701
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||| ||||||||||||||||||||||    
T  24602667 acctatattacatgggggtaaagcaccattaaccc 24602701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 308582 - 308619
Alignment:
Q  116 acctatattacagggg-ggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| |||||||||||||||||||||    
T  308582 acctatattacagggggggtaaagcaccattaaccctt 308619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 13729278 - 13729311
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||| |||||||||    
T  13729278 ctatattacaggggggtaaagcactattaaccct 13729311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 33225475 - 33225439
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33225475 acctatattacaggggg-taaagcaccattaaccctta 33225439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 21226758 - 21226721
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  21226758 acctatattacagggg--taaagcaccattaacccttaat 21226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 31826248 - 31826213
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31826248 acctatattacaggggg-taaagcaccattaaccctt 31826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1797 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1797
Description:

Target: scaffold1797; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 506 - 467
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  506 acctatattacagggggataaagcaccattaacccttaat 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1797; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 702 - 737
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  702 acctatattacaggggggtaaaacaccattaaccct 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 149643 - 149682
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  149643 acctatattacaggggggtaaagcaccattaacccataat 149682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 3841327 - 3841362
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  3841327 acctatattacaggggggtaaagcaccattaaccct 3841362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 15096558 - 15096523
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  15096558 acctatattacaggggggtaaagcaccattaaccct 15096523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 25924075 - 25924040
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  25924075 acctatattacaggggggtaaagcaccattaaccct 25924040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 39846409 - 39846370
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39846409 acctatattacaagggggtaaagcaccattaacccttaat 39846370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 41747340 - 41747305
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  41747340 acctatattacaggggggtaaagcaccattaaccct 41747305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 41747466 - 41747505
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41747466 acctatattacaggggggtaaagcatcattaacccttaat 41747505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 15290011 - 15290049
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15290011 acctatattacaggggggtaaagcaccattaacctttaa 15290049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 16308139 - 16308105
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  16308139 acctatattacaggggggtaaagcaccattaaccc 16308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 44512509 - 44512543
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  44512509 acctatattacaggggggtaaagcaccattaaccc 44512543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 24286186 - 24286149
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  24286186 acctatattacagtggggtaaagcaccattaaccctta 24286149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 33887105 - 33887072
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacc 149  Q
    ||||||||||||||||||||||||||||||||||    
T  33887105 acctatattacaggggggtaaagcaccattaacc 33887072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 46551027 - 46551064
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  46551027 acctatattacaggggggtaaagcaccattaacgctta 46551064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 26770262 - 26770298
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26770262 acctatattacaggggggtaaagcactattaaccctt 26770298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 29013440 - 29013404
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29013440 acctatattacagggggataaagcaccattaaccctt 29013404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 7226102 - 7226067
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||| |||||||||    
T  7226102 acctatattacaggggggtaaagcactattaaccct 7226067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 9650132 - 9650167
Alignment:
Q  119 tatattacaggggggtaaagcaccattaacccttaa 154  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9650132 tatattacatgggggtaaagcaccattaacccttaa 9650167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 15096729 - 15096764
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||| |||||||||||||||    
T  15096729 acctatattacaggggggtagagcaccattaaccct 15096764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 35434096 - 35434134
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaat 155  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  35434096 acctatattacagggg-gtaaagcaccattaacccttaat 35434134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 18945833 - 18945788
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaatg 161  Q
    |||||||||||||| |||||||| ||||||||||||| || |||||    
T  18945833 acctatattacaggtgggtaaagtaccattaacccttgataaaatg 18945788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 19757123 - 19757160
Alignment:
Q  116 acctatattacagggg-ggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19757123 acctatattacagggggggtaaagcaccattaaccctt 19757160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 23526764 - 23526731
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacc 149  Q
    |||||||||||||| |||||||||||||||||||    
T  23526764 acctatattacaggagggtaaagcaccattaacc 23526731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 24286412 - 24286445
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||| |||||||||||||    
T  24286412 ctatattacaggggggtaaaacaccattaaccct 24286445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 48489266 - 48489299
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||| ||||||||||||||||||    
T  48489266 ctatattacagggggttaaagcaccattaaccct 48489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 49166829 - 49166796
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||| |||||||||||||    
T  49166829 ctatattacaggggggtaaaacaccattaaccct 49166796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 54012612 - 54012648
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||| |||||||||||||||||||||    
T  54012612 acctatattacagggg-gtaaagcaccattaaccctta 54012648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 13003920 - 13003956
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  13003920 acctatattacaagggggtaaatcaccattaaccctt 13003956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 13041705 - 13041749
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaat 160  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  13041705 acctatattacaggggggtaaaacactattaacccattatgaaat 13041749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 13049782 - 13049826
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaatgaaat 160  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  13049782 acctatattacaggggggtaaaacactattaacccattatgaaat 13049826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 17261058 - 17261023
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  17261058 acctatattacaggggg-taaagcaccattaaccctt 17261023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 49167004 - 49167032
Alignment:
Q  123 ttacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||||||    
T  49167004 ttacaggggggtaaagcaccattaaccct 49167032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 55090267 - 55090302
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  55090267 acctatattacagggg-gtaaagcaccattaaccctt 55090302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 35005 - 35043
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  35005 acctatattacaggggggtaaagtaccattaacccttaa 35043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 25062 - 25024
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25062 acctatattacaagggggtaaagcaccattaacccttaa 25024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 83621 - 83655
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  83621 acctatattacaggggggtaaagcaccattaaccc 83655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 2790 - 2756
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  2790 acctatattacaggggggtaaagcaccattaaccc 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 12496568 - 12496530
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  12496568 acctatactacaggggggtaaagcaccattaacccttaa 12496530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 31261038 - 31261002
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31261038 acctatattacagggggttaaagcaccattaaccctt 31261002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 9673153 - 9673188
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||| |||||||||    
T  9673153 acctatattacaggggggtaaagcacgattaaccct 9673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 10331910 - 10331945
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10331910 acctatattacaggggggtaaagtaccattaaccct 10331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 18811385 - 18811420
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  18811385 acctatattacaggggggtaaatcaccattaaccct 18811420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 27433748 - 27433783
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||| |||||||||||||||||||||||    
T  27433748 acctatattacaagggggtaaagcaccattaaccct 27433783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 2044821 - 2044791
Alignment:
Q  121 tattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||||||||    
T  2044821 tattacaggggggtaaagcaccattaaccct 2044791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 7899755 - 7899717
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaacccttaa 154  Q
    |||||||||||||||||||||| || |||||||||||||    
T  7899755 acctatattacaggggggtaaaacatcattaacccttaa 7899717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 12014741 - 12014775
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  12014741 acctatattacaggggggtaaaacaccattaaccc 12014775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 24197529 - 24197563
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||| ||||||||||||||||||||||||    
T  24197529 ctatattacaagggggtaaagcaccattaaccctt 24197563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 28277310 - 28277276
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||| ||||||||||||||||||||||||    
T  28277310 acctatattataggggggtaaagcaccattaaccc 28277276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28277485 - 28277519
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccc 150  Q
    |||||||||||||||||||||| ||||||||||||    
T  28277485 acctatattacaggggggtaaaacaccattaaccc 28277519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 2724517 - 2724481
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2724517 acctatattacaggggg-taaagcaccattaaccctta 2724481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 18811160 - 18811124
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  18811160 acctatattataggggggtaaaacaccattaaccctt 18811124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 28551463 - 28551427
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  28551463 acctatattacaggggcgtaaaacaccattaaccctt 28551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 28593383 - 28593351
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaac 148  Q
    |||||||||||||||||||||| ||||||||||    
T  28593383 acctatattacaggggggtaaaacaccattaac 28593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 14242 - 14210
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaac 148  Q
    |||||||||||||||||||||||||||||||||    
T  14242 acctatattacaggggggtaaagcaccattaac 14210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 14471 - 14507
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctta 153  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14471 acctatattacagggg-gtaaagcaccattaaccctta 14507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 145362 - 145326
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||| ||||||||||||||    
T  145362 acctatattacaggggggtaaaacaccattaaccctt 145326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 145572 - 145608
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  145572 acctatattacagggggataaagcaccattaaccctt 145608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 407 - 438
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  407 acctatattacaggggggtaaagcaccattaa 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 63065 - 63030
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccct 151  Q
    |||||||||||||||||||||||||| |||||||||    
T  63065 acctatattacaggggggtaaagcactattaaccct 63030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 26151 - 26185
Alignment:
Q  118 ctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  26151 ctatattacaggagggtaaagcaccattaaccctt 26185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 18344 - 18303
Alignment:
Q  119 tatattacaggggggtaaagcaccattaacccttaatgaaat 160  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  18344 tatattacagaggggtaaaacaccattaaccctttatgaaat 18303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 12518 - 12482
Alignment:
Q  116 acctatattacaggggggtaaagcaccattaaccctt 152  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12518 acctatattacaggggggtaaagcactattaaacctt 12482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University