View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16623_high_6 (Length: 489)
Name: NF16623_high_6
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 27254879 - 27254404
Alignment:
| Q |
1 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27254879 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
27254780 |
T |
|
| Q |
101 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacacttttgtggaagttaaacttggaagtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27254779 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacccttttgtggaagttaaacttggaagtttc |
27254680 |
T |
|
| Q |
201 |
gtagggacaacaagggtctttgagaaaacctcaaaccccgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27254679 |
gtagggacaacaagggtctttgagaaaatctcaaaccctgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
27254580 |
T |
|
| Q |
301 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcagaatttctgatattcctatgagggttcctcctgatagtcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27254579 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcacaatttctgatattcctatgagggttcctcctgatagtcc |
27254480 |
T |
|
| Q |
401 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagcttgatcaaggagagttaatggtgtctgtt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27254479 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagcttgatcaaggagagttaatggtgtctgtt |
27254404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 21199037 - 21198562
Alignment:
| Q |
1 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21199037 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
21198938 |
T |
|
| Q |
101 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacacttttgtggaagttaaacttggaagtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21198937 |
gaagtttctttttgcaagggtagtgagagccaatgacttaccagaaaccggtaagtctgatacttgcaacccttttgtggaagttaaacttggaagtttc |
21198838 |
T |
|
| Q |
201 |
gtagggacaacaagggtctttgagaaaacctcaaaccccgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198837 |
gtagggacaacaagggtctttgagaaaatctcaaaccctgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
21198738 |
T |
|
| Q |
301 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcagaatttctgatattcctatgagggttcctcctgatagtcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198737 |
ttgtgaaggaaaaagatcccgttgctgattatccttatgtcattggtcgagtagcattcacaatttctgatattcctatgagggttcctcctgatagtcc |
21198638 |
T |
|
| Q |
401 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagcttgatcaaggagagttaatggtgtctgtt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198637 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagcttgatcaaggagagttaatggtgtctgtt |
21198562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University