View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_high_7 (Length: 396)
Name: NF16623_high_7
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 48286909 - 48286534
Alignment:
| Q |
1 |
cagtaacaccaaccatcatggatttccaaccttgaaccctaacactcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcact |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286909 |
cagtaacaccaatcatcatggatttccaaccttgaaccctaacactcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcact |
48286810 |
T |
|
| Q |
101 |
tttcaacttcctcctttgtttctcattcaactcctcatgtctaaccttcgtttccgccttcaccgccgtcttattcttcaccttcacatcaaacgcagcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286809 |
tttcaacttcctcctttgtttctcattcaactcctcatgtctaaccttcgtttcccccttcaccgccgtcttattcttcaccttcacatcaaacgcagcc |
48286710 |
T |
|
| Q |
201 |
accttcgtcgatcctaaattcaaatcaccattatctgcccatatctgaacactactttgttcaaaacgccacaccatttttgcattacggttcttcactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286709 |
accttcgtcgatcctaaattcaaatcaccattatctgcccatatctgaacactactttgttcaaaacgccacaccatttttgcattacggttcttcactt |
48286610 |
T |
|
| Q |
301 |
ccaccattgttaccgtgtttgcgtcgagataagcaccgtcggattttgtggttatgttgaaacttggaacacggaa |
376 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286609 |
ccaccattgttatcgtgtttgcgtcgagataagcaccgtcggattttgtggttatgttgaaacttggaacacggaa |
48286534 |
T |
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