View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16623_low_1 (Length: 633)
Name: NF16623_low_1
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Original strand, 17826823 - 17827411
Alignment:
| Q |
19 |
gatccaggcattaataggaggagaccatattacttctttaataataggagctttgggaggtttaatcttgatgttgaacttcttcaagattatgaagtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17826823 |
gatccaggcattaataggaggagaccatatgacttctttaataataggagctttgggaggtttaatcttgatgttgaactttttcaagattatgaagtct |
17826922 |
T |
|
| Q |
119 |
ctgacagatgcggtagatgctttgtaagtattattcctagacaaagctactaccgaggtgaagctattaactgctaatctccaatttggttttttgtcat |
218 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
17826923 |
ctgacagatgaggtagatcttttggaagtattattcccagacaaagctactgacgaggtgatgctattaactgctaatctctaatttggatttttgtcat |
17827022 |
T |
|
| Q |
219 |
taaacctgcttcggttcctgctataccaaatagtgttgatgatattgaagatagatgcttgaataacaatcttacattgaggggaccaacctctctgaca |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17827023 |
taaacctgcttcggttcctactataccaaatagtgctgatgatattgatgatagatgcttgaataacaatcttacattgaggggaccaacctctctgaca |
17827122 |
T |
|
| Q |
319 |
aagaatccaaatgttcgagattgattgaaaatgcagtaggaaatccaaaatagaagcaagccaacgccatagtttaaaagcgaacatacattcaaaaaat |
418 |
Q |
| |
|
||| ||||||||| || ||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
17827123 |
gagagtccaaatgtccgggattgattgaaaatgcagtggaaaatccaaaatagaagcaaaccaacaccatagtttaaaagcgaacgtacattcaaaaaat |
17827222 |
T |
|
| Q |
419 |
aaatgaaaggtagtttcagtatgttgaaaacaaagggaacaacacatggaaggaaaatgtaaacctctctctgcaagtttctcatcagtggggatcttat |
518 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
17827223 |
aaatgaaaggtagtttcagtatgctgaaaacaaaggg---aacacatggaagggaaatataaacctctctctgcaagtttctcgtgagtggggatcttat |
17827319 |
T |
|
| Q |
519 |
catcgaggagcctccaagctaagagggatttggatggtggtatgtcaatacaccaaacttgctcagcccattgcaccttgactgcatgatgt |
610 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17827320 |
catggaggagcctccaagctaagagggatttggatggtggtatgtcattgcaccaaacttgctcagcccattgcaccttgactgcatgatgt |
17827411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 11175682 - 11175744
Alignment:
| Q |
459 |
aacacatggaaggaaaatgtaaacctctctctgcaagtttctcatcagtggggatcttatcat |
521 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
11175682 |
aacacatagaaggaaagtgtaaacctctctctgcaagtttctcatctgtagggaccttatcat |
11175744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University