View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16623_low_12 (Length: 364)
Name: NF16623_low_12
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37710877 - 37710518
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaatggttactacaatgattctgttgtggtcatagtgaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
37710877 |
aagaactttcaaggaatgatgaaggtgaatgacaaaaaaattgatctgcaatacatgcgtaatggttactacaatgattccgttgtggtcacagtgaaag |
37710778 |
T |
|
| Q |
101 |
gttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710777 |
gttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaatt |
37710678 |
T |
|
| Q |
201 |
aaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctctca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710677 |
aaattctctcaaaggacttaacctttcaaacaatggaatcacaagtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctctca |
37710578 |
T |
|
| Q |
301 |
tgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37710577 |
tgcaaccaattgaagggtgagattcctgtggctttgacaaatttgaacttcctctcagtc |
37710518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37823277 - 37822915
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaa---tggttactacaatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| | ||||||||||| || | | |||||||||||||||||||||||||| ||||| |
|
|
| T |
37823277 |
aagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatgggtgactcttattactacaatgattctgttgtggtcacagtga |
37823178 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823177 |
aaggttttttcatggagctaacaaggatattgactgctttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
37823078 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823077 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
37822978 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37822977 |
tcatgcaaccaattgaagggtgagattcctgtggctttgacaaatttgaacttcctctcagtc |
37822915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37593577 - 37593215
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaatggttactac---aatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| | ||||||||| | || ||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
37593577 |
aagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgttgtggtcacagtga |
37593478 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593477 |
aaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
37593378 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593377 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
37593278 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37593277 |
tcatgcaaccaattgaagggtgagattcctgtggctttgacaaatttgaacttcctctcagtc |
37593215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37639119 - 37638757
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaa---tggttactacaatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || | ||||||||||| || | | |||||||||||||||||||||||||| | ||| |
|
|
| T |
37639119 |
aagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgttgtggtcacaatga |
37639020 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639019 |
aaggttttttcatggagctaacaaagatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
37638920 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638919 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcataggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
37638820 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37638819 |
tcatgcaaccaattgaagggtgagattcctgtggctttgacaaatttgaacttcctctcagtc |
37638757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 37401785 - 37402147
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaa---tggttactacaatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || | ||||||||||| || | | |||||||||||||||||||||||||| ||||| |
|
|
| T |
37401785 |
aagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgttgtggtcacagtga |
37401884 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401885 |
aaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
37401984 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401985 |
attaaattctctcaaaggacttaatctttcaaataatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
37402084 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
37402085 |
tcatgcaaccaattgacgggtgagattcctgaggctttgacaaatttgaacttcctctcagtc |
37402147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37695968 - 37695606
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaatggttactac---aatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| | ||||||||| | || | ||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
37695968 |
aagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgacggttattactataatgattctgttgtggtcacagtga |
37695869 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695868 |
aaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
37695769 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
37695768 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagtattccacaatctttgggtcatttgagaaaattggagtggttggacctc |
37695669 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37695668 |
tcatgtaaccaattgacgggagagattcctgtggctttgacaaatttgaacttcctctcagtc |
37695606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 66 - 360
Target Start/End: Complemental strand, 37532405 - 37532111
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
|||||| ||||||||||| ||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532405 |
ttactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacatg |
37532306 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37532305 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttaa |
37532206 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctcagtc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37532205 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgaagggtgagattcctgtggctttgacaaatttgaacttcctctcagtc |
37532111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 37702056 - 37701700
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaatggttactacaatgattctgttgtggtcatagtgaaag |
100 |
Q |
| |
|
|||||||||||||||||||| || || |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37702056 |
aagaactttcaaggaatgattaatgtaaatgacaaaaaaactgatctgcaatacatgcgtaacggttactacaatgattctgtggtggtcatagtgaaag |
37701957 |
T |
|
| Q |
101 |
gttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaatt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37701956 |
gttttttcatggagctaaaaaggatattgacgactttcacaactattgatttatcaaataacatgtttgaaggtagaattccacaagtcattggagaatt |
37701857 |
T |
|
| Q |
201 |
aaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctctca |
300 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| |
|
|
| T |
37701856 |
atattctcttaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtaatctaagaaacttggagtggttggacctctcc |
37701757 |
T |
|
| Q |
301 |
tgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctca |
357 |
Q |
| |
|
| |||| ||||||||||||||||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
37701756 |
aggaaccgtttgacgggtgagattcccgcggctttgacaaatttgaatttcctctca |
37701700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37435083 - 37434734
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgacnnnnnnnttgatctgcaatacatgcgtaatgg---ttactacaatgattctgttgtggtcatagtga |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| | ||||||||||| |||| |||||| ||||||||||| ||||||| | ||| |
|
|
| T |
37435083 |
aagaactttcaaggaatgatgaatgtgaatgatagccagattggtttgcaatacatgggtaagaacaattactataatgattctgtggtggtcacaatga |
37434984 |
T |
|
| Q |
98 |
aaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggaga |
197 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||| |
|
|
| T |
37434983 |
aaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacttgtttgaaggaaaaattcctctagtcattggaga |
37434884 |
T |
|
| Q |
198 |
attaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctc |
297 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||| ||||||||||||| |||||| |
|
|
| T |
37434883 |
attaaattctctcaaaggtcttaacctttcaaacaatagaatcacaggtaccattccacaatctttgagtaaattgagacatttggagtggttagacctc |
37434784 |
T |
|
| Q |
298 |
tcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaa |
347 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37434783 |
tcaaaaaaccagttgacgggtgaaattcctgtggctttgacaaatttgaa |
37434734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 66 - 357
Target Start/End: Original strand, 37393741 - 37394032
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
|||||| ||||||||||| ||| ||||| |||||||| ||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
37393741 |
ttactataatgattctgtggtgatcataatgaaaggtctttccatagagttaacgaggatattgactacttttacaactattgatttatcaaataacaag |
37393840 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
||||| || |||||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
37393841 |
tttgatggagaaatttcagaagtcattggagaattaaattctctcaaaggccttaacctctcaaacaatggaatcacaggaaccattccacaatctttaa |
37393940 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctca |
357 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
37393941 |
gtcatttgagaaatttagagtggttggacctctcaaggaaccaattgaagggtgagattcccgtggctttgacaaatttgaatttcctctca |
37394032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 66 - 300
Target Start/End: Complemental strand, 37428357 - 37428126
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
37428357 |
ttactataatgattctgtggtggtcatagtgaaaggtttttctatggagctaacaaggatattgacaactttcacaactattgatttgtcaaataacatg |
37428258 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428257 |
tttgaaggagaaattcctcaagtcgttggagaattgaattctctcaaaggtctta---tttcaaacaatggaatcacaggtagcattccacaatctttga |
37428161 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctca |
300 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| |
|
|
| T |
37428160 |
gtaatctgagaaacttggagtggttggacctctca |
37428126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 37383181 - 37383462
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
|||||| ||||||||||| |||||| |||| ||||| ||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37383181 |
ttactataatgattctgtggtggtcgtagtaaaaggactttctatggagctaacaaagatattgaccacgttcacaactattgatttatcaaataacatg |
37383280 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
37383281 |
tttgaaggagaaattccacaagtctttggagaattgatttctctcaaaggccttaacctttcaaacaataaaatcacaggtacaattccttattctttga |
37383380 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaa |
347 |
Q |
| |
|
|| |||||||||| | |||||||| ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37383381 |
gtagtttgagaaatctagagtggttagacctctcaaggaaccaattgaagggtgagattcctttggctttgacaaatttgaa |
37383462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 37440238 - 37440085
Alignment:
| Q |
203 |
attctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctctcatg |
302 |
Q |
| |
|
||||||| ||||| |||||||| | ||| |||||||||| | ||| ||||||||||||||||||| | ||||||||||| ||||||| |||||||||| | |
|
|
| T |
37440238 |
attctcttaaaggccttaacctcttaaaaaatggaatcaaaagtaccattccacaatctttgagtaaattgagaaatttagagtggtcggacctctcaag |
37440139 |
T |
|
| Q |
303 |
caaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctc |
356 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||||||||||||||| ||| |||| |
|
|
| T |
37440138 |
aaaccaattgaccggtgaaattcccgtgactttgacaaatttgaatttcctctc |
37440085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 26437570 - 26437463
Alignment:
| Q |
121 |
aggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggactta |
220 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| || | |||||||| || |||||| | |||||||||| || || || |||| |||||||| |
|
|
| T |
26437570 |
aggatcttgactactttcacaactcttgatttatcaaagaataaatttgaaggagagattccaataatcattggagagttgaagtcactcataggactta |
26437471 |
T |
|
| Q |
221 |
acctttca |
228 |
Q |
| |
|
| |||||| |
|
|
| T |
26437470 |
atctttca |
26437463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 26450939 - 26450832
Alignment:
| Q |
121 |
aggatattgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggactta |
220 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| || | |||||||| || |||||| |||||||||| || || || |||| |||||||| |
|
|
| T |
26450939 |
aggatcttgactactttcacaactcttgatttatcaaacaataaatttgaaggagagattccaacgatcattggagagttgaagtcactcataggactta |
26450840 |
T |
|
| Q |
221 |
acctttca |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
26450839 |
acctttca |
26450832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 16843851 - 16844132
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843851 |
ttactacaacgattctgtggtggtcatagtgaaaggtttttctatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
16843950 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
16843951 |
tttgaaggtgaaattccacaagtcattggagagttatattctctcattggacttaacctttcaaaaaatggaatcacgggtagcattccacaatctttga |
16844050 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||| |
|
|
| T |
16844051 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggagagattcttgaggctttggcaaatttgaa |
16844132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 16846518 - 16846799
Alignment:
| Q |
66 |
ttactacaatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatg |
165 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16846518 |
ttactataatgattctgtggtggtcatagtgaaaggtttttctatggagttaacaaggatattgactattttcacaactattgatttatcaaataacatg |
16846617 |
T |
|
| Q |
166 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
265 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
16846618 |
tttgaaggaaaaattccagaggtcattggagaattaaattctctcaaaggtcttaacctttcaaacaatagaatcacaggtaccattccacaatctttga |
16846717 |
T |
|
| Q |
266 |
gtcatttgagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaa |
347 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16846718 |
gtaaattgagacatttggagtggttggacctctcaaggaaccaaatgacgggagagattcctgtggctttgacaaatttgaa |
16846799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 73 - 356
Target Start/End: Original strand, 24218593 - 24218876
Alignment:
| Q |
73 |
aatgattctgttgtggtcatagtgaaaggttttttcatggagctaacaaggatattgactactttcacaactattgatttatcaaataacatgtttgaag |
172 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| |||| || |||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
24218593 |
aatgattctgtggtgatcataatgaaaggcttttctatagagctaacgaggatactgactactttcacaacgattgatttatcgaataacatgtttgaag |
24218692 |
T |
|
| Q |
173 |
gtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcattt |
272 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
24218693 |
gagaaattccacaagtcattgggaaattaaattttctcaaaggccttaacctttcacacaatcaaatcataggtaccattccacaatctttgagtaattt |
24218792 |
T |
|
| Q |
273 |
gagaaatttggagtggttggacctctcatgcaaccaattgacgggtgagattcctgtggctttgacaaatttgaacttcatctc |
356 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||| | |||| ||| |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
24218793 |
gcgaaatttggagtggttggacctctcaagaaacaacttgagtggtaagattcctatggctttgacaaatttgaatttcctctc |
24218876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14552745 - 14552713
Alignment:
| Q |
1 |
aagaactttcaaggaatgatgaaggtgaatgac |
33 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
14552745 |
aagaactttcaaggaatgatgaacgtgaatgac |
14552713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University