View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16623_low_15 (Length: 322)

Name: NF16623_low_15
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16623_low_15
NF16623_low_15
[»] chr8 (2 HSPs)
chr8 (105-209)||(1338019-1338126)
chr8 (77-111)||(1338141-1338175)
[»] chr4 (2 HSPs)
chr4 (25-111)||(32838731-32838816)
chr4 (105-163)||(32838835-32838896)
[»] chr1 (3 HSPs)
chr1 (235-304)||(12658474-12658541)
chr1 (105-205)||(12658244-12658347)
chr1 (31-92)||(12658143-12658203)
[»] chr5 (2 HSPs)
chr5 (105-206)||(8589275-8589375)
chr5 (244-289)||(8589479-8589524)
[»] chr3 (2 HSPs)
chr3 (25-105)||(27647141-27647222)
chr3 (109-153)||(27647068-27647112)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 1338126 - 1338019
Alignment:
Q  105 tccttccactgctttgatatcaagccacatag---ttgttcaggaaatgcaaccttccataaagccttaagggcttcctataatatgtacgttaaagtct 201  Q
    |||||||||||||  |||||||||||||  ||   || |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  1338126 tccttccactgctccgatatcaagccacgaagttcttcttcaggaaatgcaaccttccataaagccttaagggcctcctgtaatatgtacattaaagtct 1338027  T
Q  202 caagacat 209  Q
     |||||||    
T  1338026 taagacat 1338019  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 1338175 - 1338141
Alignment:
Q  77 cagtatctatctaaaatctgttgatggatccttcc 111  Q
    ||||||||| |||||||||||||||||||||||||    
T  1338175 cagtatctacctaaaatctgttgatggatccttcc 1338141  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 32838731 - 32838816
Alignment:
Q  25 accaacaaaaatcattaacacaattaattatatttcaacacaagataaaagacagtatctatctaaaatctgttgatggatccttcc 111  Q
    ||||| |||||||||||||||||||||||| |  | |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  32838731 accaataaaaatcattaacacaattaatta-agatgaacacaagataaaagacaatatatatctaaaatctgttgatggatccttcc 32838816  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 32838835 - 32838896
Alignment:
Q  105 tccttccactgctttgatatcaagccacatagttgtt---caggaaatgcaaccttccataa 163  Q
    |||||||||| || ||||||||||||||| |||| ||   ||||||||||||||||||||||    
T  32838835 tccttccactactctgatatcaagccacagagttctttttcaggaaatgcaaccttccataa 32838896  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 12658474 - 12658541
Alignment:
Q  235 ataattatgagaattagaaacactcaaaacataaactaaaagctagtttagtaaaaattataaaaatatt 304  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  12658474 ataattaccagaattagaaacactcaaaacataaactaaaagctagtttagt--aaattataaaaatatt 12658541  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 12658244 - 12658347
Alignment:
Q  105 tccttccactgctttgatatcaagccacatagttgttc---aggaaatgcaaccttccataaagccttaagggcttcctataatatgtacgttaaagtct 201  Q
    ||||||||||||| ||||||||||||| | |||| |||   || ||| ||||||||||||||  |||||| ||| |||||||||||  || |||||||||    
T  12658244 tccttccactgctctgatatcaagccatagagttcttctttagaaaaggcaaccttccataataccttaaaggcctcctataatatccacattaaagtct 12658343  T
Q  202 caag 205  Q
    ||||    
T  12658344 caag 12658347  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 12658143 - 12658203
Alignment:
Q  31 aaaaatcattaacacaattaattatatttcaacacaagataaaagacagtatctatctaaaa 92  Q
    |||||||||||||||||||||||| |  | ||||||||||||| |||| | |||||||||||    
T  12658143 aaaaatcattaacacaattaatta-agatgaacacaagataaaggacaatgtctatctaaaa 12658203  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 8589275 - 8589375
Alignment:
Q  105 tccttccactgctttgatatcaagccacatagttgttcaggaaatgcaaccttccataaagccttaagggcttcctataatatgtacgttaaagtctcaa 204  Q
    |||||||||| || ||||||||||||||| |||| || || |||||||||||||||||| ||||||||||  ||  | ||||||||| ||||||||||||    
T  8589275 tccttccactactctgatatcaagccacaaagttctttag-aaatgcaaccttccataatgccttaagggtctctgacaatatgtacattaaagtctcaa 8589373  T
Q  205 ga 206  Q
    ||    
T  8589374 ga 8589375  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 8589479 - 8589524
Alignment:
Q  244 agaattagaaacactcaaaacataaactaaaagctagtttagtaaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8589479 agaattagaaacactcaaaacataaactaaaagctagtttagtaaa 8589524  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 27647222 - 27647141
Alignment:
Q  25 accaacaaaaatcattaacacaattaattat-atttcaacacaagataaaagacagtatctatctaaaatctgttgatggat 105  Q
    ||||| ||||||||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||| | |||||||||||    
T  27647222 accaataaaaatcattaacacaattaattataatttcatcatcagataaaagacaatatctatctaaattttgttgatggat 27647141  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 27647112 - 27647068
Alignment:
Q  109 tccactgctttgatatcaagccacatagttgttcaggaaatgcaa 153  Q
    ||||||||||| |||| |||||||| |||| ||||||||||||||    
T  27647112 tccactgcttttatataaagccacaaagttcttcaggaaatgcaa 27647068  T

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